Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 AC073592.8-201ENST00000624126 511 ntBASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 AC008894.3-201ENST00000624324 3103 ntBASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 AC093214.1-201ENST00000511688 1107 ntBASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 AC005498.2-205ENST00000593218 784 ntBASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 PKD1P5-201ENST00000532415 10291 ntBASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.16■□□□□ 0.02
PTCHD1Q96NR3 MTHFR-217ENST00000641820 1569 ntBASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AL390955.2-201ENST00000603032 514 ntBASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AL133215.2-201ENST00000609242 977 ntBASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AL138828.2-201ENST00000615812 383 ntBASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 SPDYE12P-201ENST00000618416 771 ntBASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AL390754.1-201ENST00000619088 582 ntBASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms