Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 WRB-204ENST00000398753 699 ntTSL 3 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 AC093724.1-201ENST00000448659 1027 ntBASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 RNA5SP410-201ENST00000516285 106 ntBASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 RARRES2P9-201ENST00000565168 469 ntBASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 AC051619.7-201ENST00000568314 623 ntBASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 LINC00554-201ENST00000564841 3011 ntBASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP4CQ96CF2 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 AC107890.1-201ENST00000422478 521 ntBASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 SPTSSB-204ENST00000617024 1292 ntBASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 AC084121.4-201ENST00000641598 221 ntBASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 AF228730.8-201ENST00000642140 221 ntBASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP4CQ96CF2 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms