Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 REXO1L6P-201ENST00000603433 1515 ntBASIC16.04■□□□□ 0.16
HMGB4Q8WW32 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 KRT8P22-201ENST00000562317 1415 ntBASIC16.04■□□□□ 0.16
HMGB4Q8WW32 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 USP32P1-208ENST00000506594 1164 ntBASIC16.04■□□□□ 0.16
HMGB4Q8WW32 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.04■□□□□ 0.16
HMGB4Q8WW32 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB4Q8WW32 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 ANKRD19P-201ENST00000338192 862 ntBASIC16.03■□□□□ 0.16
HMGB4Q8WW32 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 AL162726.2-201ENST00000438986 1017 ntBASIC16.03■□□□□ 0.16
HMGB4Q8WW32 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 BNIP3P42-201ENST00000454982 569 ntBASIC16.03■□□□□ 0.16
HMGB4Q8WW32 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 BNIP3P29-201ENST00000598302 571 ntBASIC16.03■□□□□ 0.16
HMGB4Q8WW32 AC233724.13-201ENST00000598383 410 ntBASIC16.03■□□□□ 0.16
HMGB4Q8WW32 AC011447.5-201ENST00000616168 564 ntBASIC16.03■□□□□ 0.16
HMGB4Q8WW32 RPSAP52-203ENST00000622976 1023 ntBASIC16.03■□□□□ 0.16
HMGB4Q8WW32 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms