Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 AL136982.4-201ENST00000437689 1740 ntBASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 BNIP3P1-202ENST00000550043 1585 ntBASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC65Q8IXS2 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 SNHG9-202ENST00000564014 471 ntBASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC65Q8IXS2 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 MIR1233-2-201ENST00000408138 82 ntBASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 MIR1233-1-201ENST00000408722 82 ntBASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 SPDYE14P-201ENST00000442619 822 ntBASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 AC026150.2-201ENST00000564693 1156 ntBASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 AP003680.1-201ENST00000598970 3660 ntBASIC17.82■□□□□ 0.44
CCDC65Q8IXS2 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms