Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FAM58DP-201ENST00000428076 619 ntBASIC14.28□□□□□ -0.12
SKA3Q8IX90 AP006288.1-201ENST00000446065 395 ntBASIC14.28□□□□□ -0.12
SKA3Q8IX90 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 AL365330.1-201ENST00000607459 531 ntBASIC14.28□□□□□ -0.12
SKA3Q8IX90 AL596442.2-201ENST00000610240 980 ntBASIC14.28□□□□□ -0.12
SKA3Q8IX90 AL691403.2-201ENST00000618460 490 ntBASIC14.28□□□□□ -0.12
SKA3Q8IX90 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 AC126755.1-201ENST00000525846 6405 ntBASIC14.28□□□□□ -0.12
SKA3Q8IX90 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
SKA3Q8IX90 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
SKA3Q8IX90 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.27□□□□□ -0.12
SKA3Q8IX90 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
SKA3Q8IX90 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.27□□□□□ -0.12
SKA3Q8IX90 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.27□□□□□ -0.12
SKA3Q8IX90 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SKA3Q8IX90 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SKA3Q8IX90 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
SKA3Q8IX90 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SKA3Q8IX90 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 CNN2P11-201ENST00000429351 262 ntBASIC14.27□□□□□ -0.13
SKA3Q8IX90 DNAJB3-202ENST00000449667 1266 ntBASIC14.27□□□□□ -0.13
SKA3Q8IX90 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 SNHG9-202ENST00000564014 471 ntBASIC14.27□□□□□ -0.13
SKA3Q8IX90 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SKA3Q8IX90 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC14.27□□□□□ -0.13
SKA3Q8IX90 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 FAM45BP-202ENST00000592932 1624 ntBASIC14.26□□□□□ -0.13
SKA3Q8IX90 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 KRT18P32-201ENST00000424695 1287 ntBASIC14.26□□□□□ -0.13
SKA3Q8IX90 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms