Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 AC136604.1-201ENST00000418535 575 ntBASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 AC098850.1-201ENST00000419919 790 ntBASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 KRT18P64-201ENST00000434946 1219 ntBASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 MEIS3P1-201ENST00000495167 958 ntBASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 AC097359.3-201ENST00000603982 1210 ntBASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 AC099568.2-201ENST00000609194 695 ntBASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 AL391069.4-201ENST00000609583 481 ntBASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 MEP1AP4-201ENST00000423244 1087 ntBASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 NME2P1-201ENST00000426182 414 ntBASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC60Q8IWA6 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 AC063926.2-201ENST00000623766 1308 ntBASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC60Q8IWA6 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms