Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 AL365330.1-201ENST00000607459 531 ntBASIC19.39■□□□□ 0.69
VPS53Q5VIR6 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 PMS2P2-201ENST00000425039 1128 ntBASIC19.38■□□□□ 0.69
VPS53Q5VIR6 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.38■□□□□ 0.69
VPS53Q5VIR6 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 MAX-210ENST00000555419 765 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 AC003101.2-201ENST00000612557 442 ntBASIC19.38■□□□□ 0.69
VPS53Q5VIR6 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS53Q5VIR6 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 AC024267.1-201ENST00000582320 895 ntBASIC19.37■□□□□ 0.69
VPS53Q5VIR6 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 AP005117.1-202ENST00000581724 1908 ntBASIC19.37■□□□□ 0.69
VPS53Q5VIR6 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
VPS53Q5VIR6 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms