Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CTSL-202ENST00000342020 933 ntTSL 2 BASIC11.28□□□□□ -0.6
PRKDCP78527 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
PRKDCP78527 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC11.28□□□□□ -0.6
PRKDCP78527 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 AL353637.1-201ENST00000451571 732 ntBASIC11.28□□□□□ -0.6
PRKDCP78527 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC11.28□□□□□ -0.6
PRKDCP78527 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC11.28□□□□□ -0.6
PRKDCP78527 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC11.28□□□□□ -0.6
PRKDCP78527 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC11.28□□□□□ -0.6
PRKDCP78527 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC11.28□□□□□ -0.6
PRKDCP78527 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
PRKDCP78527 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
PRKDCP78527 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
PRKDCP78527 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
PRKDCP78527 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC11.27□□□□□ -0.6
PRKDCP78527 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
PRKDCP78527 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
PRKDCP78527 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC11.27□□□□□ -0.6
PRKDCP78527 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
PRKDCP78527 AC005740.2-201ENST00000511085 419 ntBASIC11.27□□□□□ -0.6
PRKDCP78527 ALG1L6P-201ENST00000515248 758 ntBASIC11.27□□□□□ -0.6
PRKDCP78527 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC11.27□□□□□ -0.6
PRKDCP78527 MRPL37P1-201ENST00000592451 1337 ntBASIC11.27□□□□□ -0.6
PRKDCP78527 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
PRKDCP78527 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC11.27□□□□□ -0.6
PRKDCP78527 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.6
PRKDCP78527 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
PRKDCP78527 CD276-203ENST00000537340 2439 ntTSL 2 BASIC11.27□□□□□ -0.61
PRKDCP78527 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
PRKDCP78527 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC11.27□□□□□ -0.61
PRKDCP78527 BNIP3P1-202ENST00000550043 1585 ntBASIC11.27□□□□□ -0.61
PRKDCP78527 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC11.27□□□□□ -0.61
PRKDCP78527 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC11.27□□□□□ -0.61
PRKDCP78527 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC11.27□□□□□ -0.61
PRKDCP78527 AP001002.3-201ENST00000623482 206 ntBASIC11.27□□□□□ -0.61
PRKDCP78527 AC073911.3-201ENST00000624401 631 ntBASIC11.27□□□□□ -0.61
PRKDCP78527 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
PRKDCP78527 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
PRKDCP78527 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 RPL18AP3-201ENST00000462885 528 ntBASIC11.27□□□□□ -0.61
PRKDCP78527 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC11.27□□□□□ -0.61
PRKDCP78527 AC124947.2-201ENST00000547118 1133 ntBASIC11.27□□□□□ -0.61
PRKDCP78527 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC11.27□□□□□ -0.61
PRKDCP78527 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC11.27□□□□□ -0.61
PRKDCP78527 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC11.27□□□□□ -0.61
PRKDCP78527 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PRKDCP78527 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.27□□□□□ -0.61
PRKDCP78527 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 NF2-208ENST00000403435 2568 ntTSL 5 BASIC11.26□□□□□ -0.61
PRKDCP78527 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
PRKDCP78527 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 STUB1-204ENST00000564370 875 ntTSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC11.26□□□□□ -0.61
PRKDCP78527 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 AL138781.2-201ENST00000617896 1843 ntBASIC11.26□□□□□ -0.61
PRKDCP78527 AL138799.1-201ENST00000448213 1675 ntBASIC11.26□□□□□ -0.61
PRKDCP78527 SNX15-201ENST00000352068 771 ntTSL 5 BASIC11.26□□□□□ -0.61
PRKDCP78527 AC245100.5-201ENST00000452108 331 ntBASIC11.26□□□□□ -0.61
PRKDCP78527 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 AC233280.19-201ENST00000633223 136 ntBASIC11.26□□□□□ -0.61
PRKDCP78527 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC11.26□□□□□ -0.61
PRKDCP78527 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC11.26□□□□□ -0.61
PRKDCP78527 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
PRKDCP78527 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
PRKDCP78527 PSMD4P1-201ENST00000433951 1109 ntBASIC11.26□□□□□ -0.61
PRKDCP78527 AC073150.1-201ENST00000450406 1084 ntBASIC11.26□□□□□ -0.61
PRKDCP78527 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms