Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.4■□□□□ 0.06
MSX2P35548 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC15.4■□□□□ 0.06
MSX2P35548 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
MSX2P35548 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.4■□□□□ 0.06
MSX2P35548 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.4■□□□□ 0.06
MSX2P35548 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC15.4■□□□□ 0.06
MSX2P35548 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.4■□□□□ 0.06
MSX2P35548 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.4■□□□□ 0.06
MSX2P35548 MIR3180-1-201ENST00000580374 94 ntBASIC15.4■□□□□ 0.06
MSX2P35548 MIR3180-3-201ENST00000584616 94 ntBASIC15.4■□□□□ 0.06
MSX2P35548 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
MSX2P35548 AL121956.5-201ENST00000625261 221 ntBASIC15.4■□□□□ 0.06
MSX2P35548 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
MSX2P35548 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
MSX2P35548 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.4■□□□□ 0.06
MSX2P35548 AC007292.2-201ENST00000593524 1812 ntBASIC15.4■□□□□ 0.06
MSX2P35548 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.4■□□□□ 0.06
MSX2P35548 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
MSX2P35548 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.39■□□□□ 0.05
MSX2P35548 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 AGAP7P-201ENST00000582299 2062 ntBASIC15.39■□□□□ 0.05
MSX2P35548 AGAP14-201ENST00000624701 2060 ntBASIC15.39■□□□□ 0.05
MSX2P35548 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
MSX2P35548 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.39■□□□□ 0.05
MSX2P35548 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 ARMC10P1-201ENST00000313754 855 ntBASIC15.39■□□□□ 0.05
MSX2P35548 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.39■□□□□ 0.05
MSX2P35548 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC15.39■□□□□ 0.05
MSX2P35548 AL160237.2-201ENST00000556165 472 ntBASIC15.39■□□□□ 0.05
MSX2P35548 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.39■□□□□ 0.05
MSX2P35548 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.39■□□□□ 0.05
MSX2P35548 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.39■□□□□ 0.05
MSX2P35548 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
MSX2P35548 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSX2P35548 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.39■□□□□ 0.05
MSX2P35548 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.38■□□□□ 0.05
MSX2P35548 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
MSX2P35548 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.38■□□□□ 0.05
MSX2P35548 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
MSX2P35548 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.38■□□□□ 0.05
MSX2P35548 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.38■□□□□ 0.05
MSX2P35548 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.38■□□□□ 0.05
MSX2P35548 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.38■□□□□ 0.05
MSX2P35548 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.38■□□□□ 0.05
MSX2P35548 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 AC006504.4-201ENST00000592118 1568 ntBASIC15.38■□□□□ 0.05
MSX2P35548 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
MSX2P35548 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.38■□□□□ 0.05
MSX2P35548 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSX2P35548 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.38■□□□□ 0.05
MSX2P35548 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
MSX2P35548 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.38■□□□□ 0.05
MSX2P35548 AC139887.3-201ENST00000568585 713 ntBASIC15.38■□□□□ 0.05
MSX2P35548 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.38■□□□□ 0.05
MSX2P35548 AC004706.3-202ENST00000621574 984 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms