Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 AC092364.2-201ENST00000596710 2692 ntBASIC12.44□□□□□ -0.42
HOXD3P31249 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC12.44□□□□□ -0.42
HOXD3P31249 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC12.44□□□□□ -0.42
HOXD3P31249 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 NME2P1-201ENST00000426182 414 ntBASIC12.44□□□□□ -0.42
HOXD3P31249 HLA-V-204ENST00000476601 1289 ntBASIC12.44□□□□□ -0.42
HOXD3P31249 MEIS3P1-201ENST00000495167 958 ntBASIC12.44□□□□□ -0.42
HOXD3P31249 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC12.44□□□□□ -0.42
HOXD3P31249 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC12.44□□□□□ -0.42
HOXD3P31249 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 CDK4-206ENST00000549606 558 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 LITAF-210ENST00000571976 548 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 LITAF-214ENST00000574703 486 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 NAA38-207ENST00000576861 556 ntTSL 3 BASIC12.44□□□□□ -0.42
HOXD3P31249 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC12.44□□□□□ -0.42
HOXD3P31249 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
HOXD3P31249 SRP9-204ENST00000619790 377 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC12.44□□□□□ -0.42
HOXD3P31249 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC12.44□□□□□ -0.42
HOXD3P31249 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC12.43□□□□□ -0.42
HOXD3P31249 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
HOXD3P31249 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
HOXD3P31249 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 CETN4P-206ENST00000642099 2168 ntBASIC12.43□□□□□ -0.42
HOXD3P31249 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXD3P31249 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 AC006449.6-201ENST00000612330 2296 ntBASIC12.43□□□□□ -0.42
HOXD3P31249 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXD3P31249 AC007541.1-201ENST00000570282 1469 ntBASIC12.43□□□□□ -0.42
HOXD3P31249 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
HOXD3P31249 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC12.43□□□□□ -0.42
HOXD3P31249 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC12.43□□□□□ -0.42
HOXD3P31249 COX5BP8-201ENST00000416911 349 ntBASIC12.43□□□□□ -0.42
HOXD3P31249 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 SPTLC1P1-201ENST00000447199 261 ntBASIC12.43□□□□□ -0.42
HOXD3P31249 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.43□□□□□ -0.42
HOXD3P31249 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.43□□□□□ -0.42
HOXD3P31249 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 COQ6-210ENST00000554920 649 ntTSL 3 BASIC12.43□□□□□ -0.42
HOXD3P31249 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.43□□□□□ -0.42
HOXD3P31249 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.43□□□□□ -0.42
HOXD3P31249 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC12.43□□□□□ -0.42
HOXD3P31249 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXD3P31249 AC084018.2-201ENST00000613093 2607 ntBASIC12.43□□□□□ -0.42
HOXD3P31249 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
HOXD3P31249 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXD3P31249 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
HOXD3P31249 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
HOXD3P31249 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms