Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 AC016027.1-202ENST00000607927 1699 ntBASIC12.3□□□□□ -0.44
HLA-DMBP28068 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 AC093724.1-201ENST00000448659 1027 ntBASIC12.3□□□□□ -0.44
HLA-DMBP28068 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 NMU-202ENST00000505262 693 ntTSL 3 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 PGAM5P1-201ENST00000518923 814 ntBASIC12.3□□□□□ -0.44
HLA-DMBP28068 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 AC040169.1-201ENST00000565382 521 ntBASIC12.3□□□□□ -0.44
HLA-DMBP28068 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 AC064836.3-201ENST00000607928 673 ntBASIC12.3□□□□□ -0.44
HLA-DMBP28068 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 CICP13-201ENST00000422015 2789 ntBASIC12.3□□□□□ -0.44
HLA-DMBP28068 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DMBP28068 AC008677.1-201ENST00000519230 1561 ntBASIC12.3□□□□□ -0.44
HLA-DMBP28068 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
HLA-DMBP28068 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 AC018845.2-201ENST00000568326 409 ntBASIC12.29□□□□□ -0.44
HLA-DMBP28068 MIR3909-201ENST00000579518 119 ntBASIC12.29□□□□□ -0.44
HLA-DMBP28068 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 AL009183.1-201ENST00000603760 355 ntBASIC12.29□□□□□ -0.44
HLA-DMBP28068 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms