Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC068587.6-202ENST00000641839 5619 ntBASIC16.03■□□□□ 0.16
MSH3P20585 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
MSH3P20585 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.02■□□□□ 0.16
MSH3P20585 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.02■□□□□ 0.16
MSH3P20585 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
MSH3P20585 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
MSH3P20585 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 HAUS4P1-201ENST00000406739 1145 ntBASIC16.02■□□□□ 0.16
MSH3P20585 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.02■□□□□ 0.16
MSH3P20585 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.02■□□□□ 0.16
MSH3P20585 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.02■□□□□ 0.16
MSH3P20585 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.02■□□□□ 0.16
MSH3P20585 MIR4453-201ENST00000584019 89 ntBASIC16.02■□□□□ 0.16
MSH3P20585 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.02■□□□□ 0.16
MSH3P20585 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.02■□□□□ 0.16
MSH3P20585 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSH3P20585 AC026979.3-201ENST00000607315 403 ntBASIC16.02■□□□□ 0.16
MSH3P20585 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.02■□□□□ 0.16
MSH3P20585 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.02■□□□□ 0.16
MSH3P20585 Z92544.3-201ENST00000624747 417 ntBASIC16.02■□□□□ 0.16
MSH3P20585 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.02■□□□□ 0.16
MSH3P20585 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
MSH3P20585 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSH3P20585 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSH3P20585 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSH3P20585 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSH3P20585 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
MSH3P20585 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
MSH3P20585 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.02■□□□□ 0.15
MSH3P20585 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
MSH3P20585 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
MSH3P20585 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSH3P20585 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
MSH3P20585 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.02■□□□□ 0.15
MSH3P20585 MST1L-201ENST00000442552 2185 ntBASIC16.02■□□□□ 0.15
MSH3P20585 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSH3P20585 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.01■□□□□ 0.15
MSH3P20585 AC008677.1-201ENST00000519230 1561 ntBASIC16.01■□□□□ 0.15
MSH3P20585 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.01■□□□□ 0.15
MSH3P20585 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
MSH3P20585 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.01■□□□□ 0.15
MSH3P20585 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.01■□□□□ 0.15
MSH3P20585 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.01■□□□□ 0.15
MSH3P20585 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.01■□□□□ 0.15
MSH3P20585 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
MSH3P20585 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.01■□□□□ 0.15
MSH3P20585 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.01■□□□□ 0.15
MSH3P20585 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.01■□□□□ 0.15
MSH3P20585 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.01■□□□□ 0.15
MSH3P20585 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.01■□□□□ 0.15
MSH3P20585 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.01■□□□□ 0.15
MSH3P20585 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
MSH3P20585 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.01■□□□□ 0.15
MSH3P20585 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.01■□□□□ 0.15
MSH3P20585 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSH3P20585 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.01■□□□□ 0.15
MSH3P20585 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms