Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 GGT4P-201ENST00000623672 1708 ntBASIC16.28■□□□□ 0.2
VCANP13611 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VCANP13611 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.28■□□□□ 0.2
VCANP13611 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.28■□□□□ 0.2
VCANP13611 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VCANP13611 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC16.27■□□□□ 0.2
VCANP13611 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
VCANP13611 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCANP13611 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
VCANP13611 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.27■□□□□ 0.2
VCANP13611 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCANP13611 AC026410.3-201ENST00000514280 936 ntBASIC16.27■□□□□ 0.2
VCANP13611 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC16.27■□□□□ 0.2
VCANP13611 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VCANP13611 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VCANP13611 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VCANP13611 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VCANP13611 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VCANP13611 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.27■□□□□ 0.19
VCANP13611 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.27■□□□□ 0.19
VCANP13611 AC006158.1-201ENST00000610661 249 ntBASIC16.27■□□□□ 0.19
VCANP13611 AC244250.3-201ENST00000620749 366 ntBASIC16.27■□□□□ 0.19
VCANP13611 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VCANP13611 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VCANP13611 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.27■□□□□ 0.19
VCANP13611 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC16.26■□□□□ 0.19
VCANP13611 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.26■□□□□ 0.19
VCANP13611 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VCANP13611 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.26■□□□□ 0.19
VCANP13611 MIR6816-201ENST00000620368 66 ntBASIC16.26■□□□□ 0.19
VCANP13611 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VCANP13611 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
VCANP13611 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.26■□□□□ 0.19
VCANP13611 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC16.26■□□□□ 0.19
VCANP13611 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
VCANP13611 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.26■□□□□ 0.19
VCANP13611 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.26■□□□□ 0.19
VCANP13611 RN7SL48P-201ENST00000579283 293 ntBASIC16.26■□□□□ 0.19
VCANP13611 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC16.26■□□□□ 0.19
VCANP13611 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VCANP13611 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.26■□□□□ 0.19
VCANP13611 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
VCANP13611 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.26■□□□□ 0.19
VCANP13611 AC007787.1-201ENST00000588095 1583 ntBASIC16.26■□□□□ 0.19
VCANP13611 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.26■□□□□ 0.19
VCANP13611 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC16.26■□□□□ 0.19
VCANP13611 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.26■□□□□ 0.19
VCANP13611 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.26■□□□□ 0.19
VCANP13611 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.26■□□□□ 0.19
VCANP13611 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VCANP13611 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.26■□□□□ 0.19
VCANP13611 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCANP13611 DRD5P1-201ENST00000456605 1438 ntBASIC16.26■□□□□ 0.19
VCANP13611 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.25■□□□□ 0.19
VCANP13611 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
VCANP13611 UBALD1-205ENST00000590891 2641 ntBASIC16.25■□□□□ 0.19
VCANP13611 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VCANP13611 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.25■□□□□ 0.19
VCANP13611 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.25■□□□□ 0.19
VCANP13611 AL021920.2-201ENST00000624828 1351 ntBASIC16.25■□□□□ 0.19
VCANP13611 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VCANP13611 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.25■□□□□ 0.19
VCANP13611 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.25■□□□□ 0.19
VCANP13611 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 AC006277.1-201ENST00000624348 1610 ntBASIC16.25■□□□□ 0.19
VCANP13611 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 ACKR1-201ENST00000368121 1240 ntBASIC16.25■□□□□ 0.19
VCANP13611 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.25■□□□□ 0.19
VCANP13611 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC16.25■□□□□ 0.19
VCANP13611 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 MIR4754-201ENST00000582477 89 ntBASIC16.25■□□□□ 0.19
VCANP13611 AL353770.1-201ENST00000614915 403 ntBASIC16.25■□□□□ 0.19
VCANP13611 AC051619.9-201ENST00000623237 597 ntBASIC16.25■□□□□ 0.19
VCANP13611 ABALON-201ENST00000629058 1903 ntBASIC16.25■□□□□ 0.19
VCANP13611 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.25■□□□□ 0.19
VCANP13611 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms