Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC16.3■□□□□ 0.2
COL6A3P12111 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
COL6A3P12111 LINC00431-202ENST00000636375 159 ntBASIC16.3■□□□□ 0.2
COL6A3P12111 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
COL6A3P12111 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COL6A3P12111 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.29■□□□□ 0.2
COL6A3P12111 RN7SL163P-201ENST00000583100 276 ntBASIC16.29■□□□□ 0.2
COL6A3P12111 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 HCG18-241ENST00000602290 821 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
COL6A3P12111 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.29■□□□□ 0.2
COL6A3P12111 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 AL121723.1-201ENST00000445194 1519 ntBASIC16.29■□□□□ 0.2
COL6A3P12111 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 AL137077.2-201ENST00000635124 1608 ntBASIC16.29■□□□□ 0.2
COL6A3P12111 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 AC100850.1-201ENST00000506768 649 ntBASIC16.29■□□□□ 0.2
COL6A3P12111 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC16.29■□□□□ 0.2
COL6A3P12111 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
COL6A3P12111 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A3P12111 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A3P12111 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A3P12111 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 OR2K2-202ENST00000374428 1038 ntBASIC16.28■□□□□ 0.2
COL6A3P12111 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC16.28■□□□□ 0.2
COL6A3P12111 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A3P12111 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
COL6A3P12111 AC013467.2-201ENST00000605472 835 ntBASIC16.28■□□□□ 0.2
COL6A3P12111 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 AC025262.2-201ENST00000623975 1056 ntBASIC16.28■□□□□ 0.2
COL6A3P12111 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 IL9RP3-201ENST00000442856 1674 ntBASIC16.28■□□□□ 0.2
COL6A3P12111 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A3P12111 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
COL6A3P12111 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COL6A3P12111 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A3P12111 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A3P12111 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
COL6A3P12111 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC16.28■□□□□ 0.2
COL6A3P12111 AC138466.5-201ENST00000624002 808 ntBASIC16.28■□□□□ 0.2
COL6A3P12111 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 AC098818.2-201ENST00000564925 2320 ntBASIC16.28■□□□□ 0.2
COL6A3P12111 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 RN7SL67P-201ENST00000492147 296 ntBASIC16.28■□□□□ 0.2
COL6A3P12111 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 AC027237.1-201ENST00000560942 655 ntBASIC16.28■□□□□ 0.2
COL6A3P12111 STUB1-204ENST00000564370 875 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A3P12111 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A3P12111 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.27■□□□□ 0.2
COL6A3P12111 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.27■□□□□ 0.2
COL6A3P12111 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
COL6A3P12111 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
COL6A3P12111 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms