Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 MPV17-206ENST00000402722 827 ntTSL 3 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 IGHV3OR16-16-201ENST00000563644 343 ntBASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 RN7SL560P-201ENST00000577943 264 ntBASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 AC091271.1-201ENST00000611877 1162 ntBASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CSB-PGBD3P0DP91 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 MIR1247-201ENST00000408206 136 ntBASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 GOLGA2P4-201ENST00000441462 777 ntBASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 RHOXF1P1-202ENST00000635473 501 ntBASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CSB-PGBD3P0DP91 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 RPL8-205ENST00000527914 551 ntTSL 3 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 KRT90P-201ENST00000549264 1064 ntBASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms