Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 LINC00554-201ENST00000564841 3011 ntBASIC15.82■□□□□ 0.12
VPS4BO75351 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
VPS4BO75351 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS4BO75351 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VPS4BO75351 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 HYMAI-201ENST00000635591 3347 ntBASIC15.81■□□□□ 0.12
VPS4BO75351 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VPS4BO75351 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
VPS4BO75351 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VPS4BO75351 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 AL139400.1-201ENST00000366220 510 ntBASIC15.81■□□□□ 0.12
VPS4BO75351 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS4BO75351 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VPS4BO75351 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VPS4BO75351 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS4BO75351 AC005034.1-201ENST00000426657 489 ntBASIC15.81■□□□□ 0.12
VPS4BO75351 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS4BO75351 AC096734.2-201ENST00000562054 433 ntBASIC15.81■□□□□ 0.12
VPS4BO75351 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.81■□□□□ 0.12
VPS4BO75351 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VPS4BO75351 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
VPS4BO75351 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS4BO75351 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4BO75351 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4BO75351 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
VPS4BO75351 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4BO75351 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 AC008677.1-201ENST00000519230 1561 ntBASIC15.8■□□□□ 0.12
VPS4BO75351 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4BO75351 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4BO75351 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.8■□□□□ 0.12
VPS4BO75351 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4BO75351 AC063926.2-201ENST00000623766 1308 ntBASIC15.8■□□□□ 0.12
VPS4BO75351 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4BO75351 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
VPS4BO75351 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VPS4BO75351 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.8■□□□□ 0.12
VPS4BO75351 PMS2P4-201ENST00000412466 1052 ntBASIC15.8■□□□□ 0.12
VPS4BO75351 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4BO75351 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4BO75351 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 AC069262.1-201ENST00000539058 672 ntBASIC15.8■□□□□ 0.12
VPS4BO75351 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.8■□□□□ 0.12
VPS4BO75351 KRT19P2-202ENST00000557173 1012 ntBASIC15.8■□□□□ 0.12
VPS4BO75351 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.8■□□□□ 0.12
VPS4BO75351 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.8■□□□□ 0.12
VPS4BO75351 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4BO75351 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4BO75351 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4BO75351 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.8■□□□□ 0.12
VPS4BO75351 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
VPS4BO75351 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VPS4BO75351 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4BO75351 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VPS4BO75351 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 AC006058.4-201ENST00000624016 1670 ntBASIC15.79■□□□□ 0.12
VPS4BO75351 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4BO75351 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS4BO75351 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS4BO75351 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
VPS4BO75351 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4BO75351 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms