Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.18□□□□□ -0.14
LMX1BO60663 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.18□□□□□ -0.14
LMX1BO60663 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.17□□□□□ -0.14
LMX1BO60663 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 AC016027.1-202ENST00000607927 1699 ntBASIC14.17□□□□□ -0.14
LMX1BO60663 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
LMX1BO60663 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
LMX1BO60663 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.17□□□□□ -0.14
LMX1BO60663 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
LMX1BO60663 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.17□□□□□ -0.14
LMX1BO60663 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 PPT1-215ENST00000641471 2368 ntBASIC14.17□□□□□ -0.14
LMX1BO60663 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.17□□□□□ -0.14
LMX1BO60663 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LMX1BO60663 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LMX1BO60663 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.17□□□□□ -0.14
LMX1BO60663 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.16□□□□□ -0.14
LMX1BO60663 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
LMX1BO60663 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
LMX1BO60663 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
LMX1BO60663 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 AC092919.2-201ENST00000623631 1645 ntBASIC14.16□□□□□ -0.14
LMX1BO60663 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
LMX1BO60663 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.16□□□□□ -0.14
LMX1BO60663 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.16□□□□□ -0.14
LMX1BO60663 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.16□□□□□ -0.14
LMX1BO60663 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.16□□□□□ -0.14
LMX1BO60663 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.16□□□□□ -0.14
LMX1BO60663 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.16□□□□□ -0.14
LMX1BO60663 AC022145.2-201ENST00000598203 171 ntBASIC14.16□□□□□ -0.14
LMX1BO60663 AC021097.1-201ENST00000607902 574 ntBASIC14.16□□□□□ -0.14
LMX1BO60663 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.16□□□□□ -0.14
LMX1BO60663 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.16□□□□□ -0.14
LMX1BO60663 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
LMX1BO60663 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
LMX1BO60663 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LMX1BO60663 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms