Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PTPN20-223ENST00000509900 693 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 AC025419.1-202ENST00000535315 744 ntTSL 3 BASIC22.46■■□□□ 1.19
MSH5O43196 SLIRP-211ENST00000557623 865 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH5O43196 AC096734.2-201ENST00000562054 433 ntBASIC22.46■■□□□ 1.19
MSH5O43196 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC22.46■■□□□ 1.19
MSH5O43196 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 AC104763.3-201ENST00000613765 618 ntBASIC22.46■■□□□ 1.19
MSH5O43196 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 AL096828.2-201ENST00000567259 1965 ntBASIC22.46■■□□□ 1.19
MSH5O43196 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
MSH5O43196 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 PC-214ENST00000628663 1470 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH5O43196 AC104794.2-201ENST00000567540 1572 ntBASIC22.46■■□□□ 1.19
MSH5O43196 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 OS9-205ENST00000413095 1660 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH5O43196 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC22.45■■□□□ 1.19
MSH5O43196 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC22.45■■□□□ 1.19
MSH5O43196 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
MSH5O43196 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC22.45■■□□□ 1.18
MSH5O43196 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC22.45■■□□□ 1.18
MSH5O43196 AC009237.1-201ENST00000442127 744 ntBASIC22.45■■□□□ 1.18
MSH5O43196 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC22.45■■□□□ 1.18
MSH5O43196 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH5O43196 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC22.45■■□□□ 1.18
MSH5O43196 MTCYBP37-201ENST00000510642 1133 ntBASIC22.45■■□□□ 1.18
MSH5O43196 AC114781.2-201ENST00000515670 394 ntTSL 3 BASIC22.45■■□□□ 1.18
MSH5O43196 CTHRC1-203ENST00000520337 1198 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH5O43196 CD226-202ENST00000577287 1009 ntTSL 3 BASIC22.45■■□□□ 1.18
MSH5O43196 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH5O43196 AL365181.4-201ENST00000609800 547 ntBASIC22.45■■□□□ 1.18
MSH5O43196 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH5O43196 AF228730.6-201ENST00000641497 218 ntBASIC22.45■■□□□ 1.18
MSH5O43196 AC084121.3-201ENST00000641716 218 ntBASIC22.45■■□□□ 1.18
MSH5O43196 AC105233.6-201ENST00000642093 218 ntBASIC22.45■■□□□ 1.18
MSH5O43196 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC22.45■■□□□ 1.18
MSH5O43196 TRIM64FP-201ENST00000427305 1371 ntBASIC22.45■■□□□ 1.18
MSH5O43196 AC009501.3-201ENST00000605001 1352 ntBASIC22.45■■□□□ 1.18
MSH5O43196 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.18
MSH5O43196 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC22.45■■□□□ 1.18
MSH5O43196 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
MSH5O43196 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH5O43196 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC22.45■■□□□ 1.18
MSH5O43196 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH5O43196 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
MSH5O43196 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH5O43196 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH5O43196 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH5O43196 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
MSH5O43196 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
MSH5O43196 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH5O43196 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC22.44■■□□□ 1.18
MSH5O43196 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH5O43196 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC22.44■■□□□ 1.18
MSH5O43196 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH5O43196 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC22.44■■□□□ 1.18
MSH5O43196 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH5O43196 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 AC096633.1-201ENST00000422446 749 ntBASIC22.44■■□□□ 1.18
MSH5O43196 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC22.44■■□□□ 1.18
MSH5O43196 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
MSH5O43196 MTND4P18-201ENST00000447010 465 ntBASIC22.44■■□□□ 1.18
MSH5O43196 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC22.44■■□□□ 1.18
MSH5O43196 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH5O43196 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 POLD4-207ENST00000531239 584 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH5O43196 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
MSH5O43196 ETFBKMT-204ENST00000538391 1067 ntTSL 3 BASIC22.44■■□□□ 1.18
MSH5O43196 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
MSH5O43196 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
MSH5O43196 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms