RNA–Protein interactions for RNA: ENST00000520337.1

CTHRC1-203, Transcript of collagen triple helix repeat containing 1, humanhuman

TSL 1 (best) BASIC

Gene CTHRC1, Length 1,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-203ENST00000520337 AEBP2Q6ZN18 517 aaPredicted RBP29.97■■■□□ 2.39
CTHRC1-203ENST00000520337 CHIC1Q5VXU3 224 aa28.3■■■□□ 2.12
CTHRC1-203ENST00000520337 SENP3Q9H4L4 574 aaPredicted RBP25.51■■□□□ 1.67
CTHRC1-203ENST00000520337 PHF23Q9BUL5 403 aaPredicted RBP25.19■■□□□ 1.62
CTHRC1-203ENST00000520337 FOXD1Q16676 465 aa23.92■■□□□ 1.42
CTHRC1-203ENST00000520337 PLPPR3Q6T4P5 718 aa22.8■■□□□ 1.24
CTHRC1-203ENST00000520337 POTEDQ86YR6 584 aa22.72■■□□□ 1.23
CTHRC1-203ENST00000520337 MSH5O43196 834 aa22.45■■□□□ 1.18
CTHRC1-203ENST00000520337 PIAS4Q8N2W9 510 aaPredicted RBP22.15■■□□□ 1.14
CTHRC1-203ENST00000520337 PPP6R1Q9UPN7 881 aa22.09■■□□□ 1.13
CTHRC1-203ENST00000520337 ADRA2BP18089 450 aa21.94■■□□□ 1.1
CTHRC1-203ENST00000520337 MAPK8IP2Q13387 824 aaPredicted RBP20.31■□□□□ 0.84
CTHRC1-203ENST00000520337 SCAF1Q9H7N4 1312 aaKnown RBP20.23■□□□□ 0.83
CTHRC1-203ENST00000520337 DMRT2Q9Y5R5 561 aa20.21■□□□□ 0.83
CTHRC1-203ENST00000520337 PPP4R3CPQ6ZMV5 832 aa19.98■□□□□ 0.79
CTHRC1-203ENST00000520337 CNKSR2Q8WXI2 1034 aa19.57■□□□□ 0.72
CTHRC1-203ENST00000520337 CACNB1Q02641 598 aaPredicted RBP19.53■□□□□ 0.72
CTHRC1-203ENST00000520337 NCBP3Q53F19 620 aaKnown RBP19.39■□□□□ 0.69
CTHRC1-203ENST00000520337 HOXD11P31277 338 aaPredicted RBP19.36■□□□□ 0.69
CTHRC1-203ENST00000520337 RNF216Q9NWF9 866 aaPredicted RBP19.32■□□□□ 0.68
CTHRC1-203ENST00000520337 DCAF8L1A6NGE4 600 aa19.3■□□□□ 0.68
CTHRC1-203ENST00000520337 RNF39Q9H2S5 420 aa19.18■□□□□ 0.66
CTHRC1-203ENST00000520337 NPM3O75607 178 aaKnown RBP19.02■□□□□ 0.64
CTHRC1-203ENST00000520337 KCNA4P22459 653 aa18.92■□□□□ 0.62
CTHRC1-203ENST00000520337 C1QBPQ07021 282 aaKnown RBP18.84■□□□□ 0.61
CTHRC1-203ENST00000520337 DNAJC5BQ9UF47 199 aa18.73■□□□□ 0.59
CTHRC1-203ENST00000520337 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.42■□□□□ 0.54
CTHRC1-203ENST00000520337 NISCHQ9Y2I1 1504 aa18.08■□□□□ 0.48
CTHRC1-203ENST00000520337 SLC4A2P04920 1241 aa18.06■□□□□ 0.48
CTHRC1-203ENST00000520337 U3KPZ7 1027 aaPredicted RBP18.04■□□□□ 0.48
CTHRC1-203ENST00000520337 SLC4A1APQ9BWU0 796 aaKnown RBP17.97■□□□□ 0.47
CTHRC1-203ENST00000520337 SPINK5Q9NQ38 1064 aaPredicted RBP17.84■□□□□ 0.45
CTHRC1-203ENST00000520337 DSG3P32926 999 aa17.83■□□□□ 0.44
CTHRC1-203ENST00000520337 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.77■□□□□ 0.44
CTHRC1-203ENST00000520337 HNRNPUL2Q1KMD3 747 aaKnown RBP17.77■□□□□ 0.44
CTHRC1-203ENST00000520337 CAPN15O75808 1086 aa17.74■□□□□ 0.43
CTHRC1-203ENST00000520337 APLP2Q06481 763 aa17.73■□□□□ 0.43
CTHRC1-203ENST00000520337 POTEHQ6S545 545 aa17.69■□□□□ 0.42
CTHRC1-203ENST00000520337 SAMD1Q6SPF0 538 aaPredicted RBP17.66■□□□□ 0.42
CTHRC1-203ENST00000520337 MYCNP04198 464 aaPredicted RBP17.64■□□□□ 0.41
CTHRC1-203ENST00000520337 FOXD4L1Q9NU39 408 aa17.63■□□□□ 0.41
CTHRC1-203ENST00000520337 ZNF219Q9P2Y4 722 aaPredicted RBP17.5■□□□□ 0.39
CTHRC1-203ENST00000520337 TRHP20396 242 aaPredicted RBP17.42■□□□□ 0.38
CTHRC1-203ENST00000520337 ZBTB22O15209 634 aa17.38■□□□□ 0.37
CTHRC1-203ENST00000520337 ABCB7O75027 752 aa17.32■□□□□ 0.36
CTHRC1-203ENST00000520337 ATXN8OSP0DMR3 200 aa17.11■□□□□ 0.33
CTHRC1-203ENST00000520337 ATF5Q9Y2D1 282 aaPredicted RBP17.09■□□□□ 0.33
CTHRC1-203ENST00000520337 POLA2Q14181 598 aa17.05■□□□□ 0.32
CTHRC1-203ENST00000520337 RBM42Q9BTD8 480 aaKnown RBP16.91■□□□□ 0.3
CTHRC1-203ENST00000520337 CSRNP3Q8WYN3 585 aa16.9■□□□□ 0.3
CTHRC1-203ENST00000520337 ZBTB12Q9Y330 459 aaPredicted RBP16.85■□□□□ 0.29
CTHRC1-203ENST00000520337 EHMT2Q96KQ7 1210 aa16.83■□□□□ 0.28
CTHRC1-203ENST00000520337 CHRDL2Q6WN34 429 aa16.77■□□□□ 0.28
CTHRC1-203ENST00000520337 FBLN2P98095 1184 aa16.53■□□□□ 0.24
CTHRC1-203ENST00000520337 AKT1S1Q96B36 256 aa16.49■□□□□ 0.23
CTHRC1-203ENST00000520337 OSCARQ8IYS5 282 aa16.48■□□□□ 0.23
CTHRC1-203ENST00000520337 REM2Q8IYK8 340 aaPredicted RBP16.37■□□□□ 0.21
CTHRC1-203ENST00000520337 SP7Q8TDD2 431 aaPredicted RBP16.37■□□□□ 0.21
CTHRC1-203ENST00000520337 MKRN4PQ13434 485 aaPredicted RBP16.35■□□□□ 0.21
CTHRC1-203ENST00000520337 SPDYE2BA6NHP3 402 aa16.32■□□□□ 0.2
CTHRC1-203ENST00000520337 SPDYE6P0CI01 402 aa16.32■□□□□ 0.2
CTHRC1-203ENST00000520337 SPDYE2Q495Y8 402 aa16.32■□□□□ 0.2
CTHRC1-203ENST00000520337 PIP4P2Q8N4L2 257 aa16.31■□□□□ 0.2
CTHRC1-203ENST00000520337 PITPNM1O00562 1244 aa16.18■□□□□ 0.18
CTHRC1-203ENST00000520337 FXR2P51116 673 aaKnown RBP eCLIP16.16■□□□□ 0.18
CTHRC1-203ENST00000520337 ZNF692Q9BU19 519 aaPredicted RBP16.12■□□□□ 0.17
CTHRC1-203ENST00000520337 SSUH2Q9Y2M2 353 aa16.11■□□□□ 0.17
CTHRC1-203ENST00000520337 HAX1O00165 279 aa16.08■□□□□ 0.16
CTHRC1-203ENST00000520337 EVX2Q03828 476 aa15.98■□□□□ 0.15
CTHRC1-203ENST00000520337 SPDYE1Q8NFV5 336 aaPredicted RBP15.94■□□□□ 0.14
CTHRC1-203ENST00000520337 PABPN1Q86U42 306 aaKnown RBP eCLIP15.88■□□□□ 0.13
CTHRC1-203ENST00000520337 CCDC180Q9P1Z9 1646 aa15.85■□□□□ 0.13
CTHRC1-203ENST00000520337 CLEC11AQ9Y240 323 aa15.82■□□□□ 0.12
CTHRC1-203ENST00000520337 SPDYE4A6NLX3 237 aa15.8■□□□□ 0.12
CTHRC1-203ENST00000520337 PRKAR2AP13861 404 aaKnown RBP15.74■□□□□ 0.11
CTHRC1-203ENST00000520337 C19orf67A6NJJ6 358 aa15.65■□□□□ 0.1
CTHRC1-203ENST00000520337 PRR29P0C7W0 189 aa15.65■□□□□ 0.1
CTHRC1-203ENST00000520337 STAG3Q9UJ98 1225 aa15.61■□□□□ 0.09
CTHRC1-203ENST00000520337 GABBR2O75899 941 aa15.53■□□□□ 0.08
CTHRC1-203ENST00000520337 PROM2Q8N271 834 aa15.51■□□□□ 0.07
CTHRC1-203ENST00000520337 CHADLQ6NUI6 762 aa15.5■□□□□ 0.07
CTHRC1-203ENST00000520337 LHX8Q68G74 356 aa15.36■□□□□ 0.05
CTHRC1-203ENST00000520337 FARP1Q9Y4F1 1045 aaPredicted RBP15.33■□□□□ 0.04
CTHRC1-203ENST00000520337 FKBP8Q14318 412 aa15.31■□□□□ 0.04
CTHRC1-203ENST00000520337 CREBZFQ9NS37 354 aa15.31■□□□□ 0.04
CTHRC1-203ENST00000520337 POTEIP0CG38 1075 aa15.26■□□□□ 0.03
CTHRC1-203ENST00000520337 CD44P16070 742 aaKnown RBP15.2■□□□□ 0.02
CTHRC1-203ENST00000520337 ZCCHC6Q5VYS8 1495 aaKnown RBP15.15■□□□□ 0.02
CTHRC1-203ENST00000520337 NPM1P06748 294 aaKnown RBP eCLIP15.12■□□□□ 0.01
CTHRC1-203ENST00000520337 MNX1P50219 401 aaPredicted RBP15.09■□□□□ 0.01
CTHRC1-203ENST00000520337 PLEKHG5O94827 1062 aa15.08■□□□□ 0
CTHRC1-203ENST00000520337 CLCN6P51797 869 aa15.07■□□□□ 0
CTHRC1-203ENST00000520337 ABCC9O60706 1549 aa15.02■□□□□ -0
CTHRC1-203ENST00000520337 MIER1Q8N108 512 aa15.02■□□□□ -0
CTHRC1-203ENST00000520337 FBXO3Q9UK99 471 aa15.01□□□□□ -0.01
CTHRC1-203ENST00000520337 PAK3O75914 559 aaPredicted RBP14.99□□□□□ -0.01
CTHRC1-203ENST00000520337 PLCD3Q8N3E9 789 aa14.97□□□□□ -0.01
CTHRC1-203ENST00000520337 ZNF579Q8NAF0 562 aaKnown RBP14.97□□□□□ -0.01
CTHRC1-203ENST00000520337 ZRANB1Q9UGI0 708 aa14.96□□□□□ -0.01
CTHRC1-203ENST00000520337 DCAF1Q9Y4B6 1507 aa14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms