Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.95■□□□□ 0.46
MSH4O15457 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.95■□□□□ 0.46
MSH4O15457 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
MSH4O15457 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.95■□□□□ 0.46
MSH4O15457 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
MSH4O15457 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
MSH4O15457 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.95■□□□□ 0.46
MSH4O15457 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.95■□□□□ 0.46
MSH4O15457 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.95■□□□□ 0.46
MSH4O15457 LINC01115-203ENST00000606068 577 ntBASIC17.95■□□□□ 0.46
MSH4O15457 AC009118.2-201ENST00000613275 655 ntBASIC17.95■□□□□ 0.46
MSH4O15457 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.95■□□□□ 0.46
MSH4O15457 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
MSH4O15457 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.95■□□□□ 0.46
MSH4O15457 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.95■□□□□ 0.46
MSH4O15457 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
MSH4O15457 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.94■□□□□ 0.46
MSH4O15457 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
MSH4O15457 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 AL589987.1-201ENST00000453380 819 ntBASIC17.94■□□□□ 0.46
MSH4O15457 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.94■□□□□ 0.46
MSH4O15457 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.94■□□□□ 0.46
MSH4O15457 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.94■□□□□ 0.46
MSH4O15457 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.94■□□□□ 0.46
MSH4O15457 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
MSH4O15457 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.94■□□□□ 0.46
MSH4O15457 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.94■□□□□ 0.46
MSH4O15457 AL607033.1-201ENST00000623900 1599 ntBASIC17.94■□□□□ 0.46
MSH4O15457 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.94■□□□□ 0.46
MSH4O15457 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
MSH4O15457 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.94■□□□□ 0.46
MSH4O15457 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.94■□□□□ 0.46
MSH4O15457 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.94■□□□□ 0.46
MSH4O15457 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.94■□□□□ 0.46
MSH4O15457 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH4O15457 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
MSH4O15457 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
MSH4O15457 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
MSH4O15457 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.93■□□□□ 0.46
MSH4O15457 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
MSH4O15457 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.93■□□□□ 0.46
MSH4O15457 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
MSH4O15457 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 GNAQP1-201ENST00000444815 1067 ntBASIC17.93■□□□□ 0.46
MSH4O15457 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
MSH4O15457 MIR4313-201ENST00000580760 101 ntBASIC17.93■□□□□ 0.46
MSH4O15457 AC138761.1-201ENST00000584393 385 ntBASIC17.93■□□□□ 0.46
MSH4O15457 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 SRD5A3P1-201ENST00000603021 949 ntBASIC17.93■□□□□ 0.46
MSH4O15457 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.93■□□□□ 0.46
MSH4O15457 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.93■□□□□ 0.46
MSH4O15457 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
MSH4O15457 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
MSH4O15457 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH4O15457 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH4O15457 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.92■□□□□ 0.46
MSH4O15457 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.92■□□□□ 0.46
MSH4O15457 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
MSH4O15457 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms