Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.62■□□□□ 0.25
PCDH9Q9HC56 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 AC023511.2-201ENST00000618803 211 ntBASIC16.62■□□□□ 0.25
PCDH9Q9HC56 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 TMBIM7P-203ENST00000641617 1718 ntBASIC16.62■□□□□ 0.25
PCDH9Q9HC56 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDH9Q9HC56 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 DBET-201ENST00000630918 3363 ntBASIC16.61■□□□□ 0.25
PCDH9Q9HC56 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.61■□□□□ 0.25
PCDH9Q9HC56 AC092850.2-201ENST00000623821 2697 ntBASIC16.61■□□□□ 0.25
PCDH9Q9HC56 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 TIMM8BP1-201ENST00000452384 211 ntBASIC16.61■□□□□ 0.25
PCDH9Q9HC56 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 KRT8P48-201ENST00000515599 1220 ntBASIC16.61■□□□□ 0.25
PCDH9Q9HC56 AC243562.1-201ENST00000560672 389 ntBASIC16.61■□□□□ 0.25
PCDH9Q9HC56 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms