Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 AC020658.6-201ENST00000623564 1870 ntBASIC15.37■□□□□ 0.05
BRF2Q9HAW0 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 AC104640.1-201ENST00000562617 2109 ntBASIC15.37■□□□□ 0.05
BRF2Q9HAW0 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.37■□□□□ 0.05
BRF2Q9HAW0 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BRF2Q9HAW0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 AP3S2-216ENST00000617003 1561 ntBASIC15.36■□□□□ 0.05
BRF2Q9HAW0 REXO1L1P-202ENST00000608646 1974 ntBASIC15.36■□□□□ 0.05
BRF2Q9HAW0 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 AL139384.1-201ENST00000612143 3047 ntBASIC15.36■□□□□ 0.05
BRF2Q9HAW0 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 YBX1P5-201ENST00000509441 847 ntBASIC15.36■□□□□ 0.05
BRF2Q9HAW0 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 SLC25A39P2-201ENST00000537614 270 ntBASIC15.36■□□□□ 0.05
BRF2Q9HAW0 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 AC105339.1-204ENST00000636249 355 ntBASIC15.36■□□□□ 0.05
BRF2Q9HAW0 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 AC126177.1-201ENST00000547829 2218 ntBASIC15.36■□□□□ 0.05
BRF2Q9HAW0 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BRF2Q9HAW0 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 AL136982.4-201ENST00000437689 1740 ntBASIC15.35■□□□□ 0.05
BRF2Q9HAW0 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.35■□□□□ 0.05
BRF2Q9HAW0 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms