Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL12A1Q99715 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 AC098935.1-201ENST00000446057 611 ntBASIC13.79□□□□□ -0.2
COL12A1Q99715 AL157792.1-201ENST00000488281 530 ntBASIC13.79□□□□□ -0.2
COL12A1Q99715 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.79□□□□□ -0.2
COL12A1Q99715 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.79□□□□□ -0.2
COL12A1Q99715 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.79□□□□□ -0.2
COL12A1Q99715 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.79□□□□□ -0.2
COL12A1Q99715 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 DRD5P1-201ENST00000456605 1438 ntBASIC13.79□□□□□ -0.2
COL12A1Q99715 AL138781.2-201ENST00000617896 1843 ntBASIC13.79□□□□□ -0.2
COL12A1Q99715 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 AC011676.5-201ENST00000624864 2660 ntBASIC13.78□□□□□ -0.2
COL12A1Q99715 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL12A1Q99715 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL12A1Q99715 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 ACKR1-201ENST00000368121 1240 ntBASIC13.78□□□□□ -0.2
COL12A1Q99715 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
COL12A1Q99715 NEU3-205ENST00000531619 582 ntTSL 5 BASIC13.78□□□□□ -0.2
COL12A1Q99715 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL12A1Q99715 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
COL12A1Q99715 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL12A1Q99715 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
COL12A1Q99715 AC134043.2-201ENST00000624206 2238 ntBASIC13.78□□□□□ -0.2
COL12A1Q99715 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.78□□□□□ -0.2
COL12A1Q99715 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
COL12A1Q99715 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC13.78□□□□□ -0.2
COL12A1Q99715 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.78□□□□□ -0.2
COL12A1Q99715 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.78□□□□□ -0.2
COL12A1Q99715 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.78□□□□□ -0.2
COL12A1Q99715 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.78□□□□□ -0.2
COL12A1Q99715 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 AC005332.8-201ENST00000622750 2735 ntBASIC13.78□□□□□ -0.2
COL12A1Q99715 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL12A1Q99715 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
COL12A1Q99715 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.77□□□□□ -0.2
COL12A1Q99715 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
COL12A1Q99715 AC026410.3-201ENST00000514280 936 ntBASIC13.77□□□□□ -0.2
COL12A1Q99715 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC13.77□□□□□ -0.2
COL12A1Q99715 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.77□□□□□ -0.2
COL12A1Q99715 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.77□□□□□ -0.2
COL12A1Q99715 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC13.77□□□□□ -0.2
COL12A1Q99715 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.77□□□□□ -0.2
COL12A1Q99715 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC13.77□□□□□ -0.2
COL12A1Q99715 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC13.77□□□□□ -0.2
COL12A1Q99715 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
COL12A1Q99715 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.77□□□□□ -0.2
COL12A1Q99715 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL12A1Q99715 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC13.77□□□□□ -0.21
COL12A1Q99715 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC13.77□□□□□ -0.21
COL12A1Q99715 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.77□□□□□ -0.21
COL12A1Q99715 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.77□□□□□ -0.21
COL12A1Q99715 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
COL12A1Q99715 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
COL12A1Q99715 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
COL12A1Q99715 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.77□□□□□ -0.21
COL12A1Q99715 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.77□□□□□ -0.21
COL12A1Q99715 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC13.77□□□□□ -0.21
COL12A1Q99715 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
COL12A1Q99715 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL12A1Q99715 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL12A1Q99715 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL12A1Q99715 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.76□□□□□ -0.21
COL12A1Q99715 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL12A1Q99715 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.76□□□□□ -0.21
COL12A1Q99715 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms