Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.52■□□□□ 0.08
VPS33AQ96AX1 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 TP73-AS1-207ENST00000624167 988 ntBASIC15.52■□□□□ 0.08
VPS33AQ96AX1 AC005593.1-201ENST00000624894 515 ntBASIC15.52■□□□□ 0.08
VPS33AQ96AX1 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS33AQ96AX1 C8orf49-201ENST00000525043 1968 ntBASIC15.52■□□□□ 0.07
VPS33AQ96AX1 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.07
VPS33AQ96AX1 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 HAUS4P1-201ENST00000406739 1145 ntBASIC15.51■□□□□ 0.07
VPS33AQ96AX1 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 UNC93B7-201ENST00000509439 705 ntBASIC15.51■□□□□ 0.07
VPS33AQ96AX1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VPS33AQ96AX1 AC006486.2-201ENST00000624246 2199 ntBASIC15.51■□□□□ 0.07
VPS33AQ96AX1 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms