Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.93■□□□□ 0.62
BRF1Q92994 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.93■□□□□ 0.62
BRF1Q92994 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.93■□□□□ 0.62
BRF1Q92994 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.93■□□□□ 0.62
BRF1Q92994 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.93■□□□□ 0.62
BRF1Q92994 ALG1L8P-201ENST00000533887 760 ntBASIC18.93■□□□□ 0.62
BRF1Q92994 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.93■□□□□ 0.62
BRF1Q92994 AC004835.2-201ENST00000603762 682 ntBASIC18.93■□□□□ 0.62
BRF1Q92994 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.93■□□□□ 0.62
BRF1Q92994 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.93■□□□□ 0.62
BRF1Q92994 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
BRF1Q92994 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.93■□□□□ 0.62
BRF1Q92994 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BRF1Q92994 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.93■□□□□ 0.62
BRF1Q92994 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BRF1Q92994 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC18.93■□□□□ 0.62
BRF1Q92994 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.93■□□□□ 0.62
BRF1Q92994 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BRF1Q92994 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
BRF1Q92994 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
BRF1Q92994 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.92■□□□□ 0.62
BRF1Q92994 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.92■□□□□ 0.62
BRF1Q92994 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
BRF1Q92994 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.92■□□□□ 0.62
BRF1Q92994 RPS8P6-201ENST00000426177 609 ntBASIC18.92■□□□□ 0.62
BRF1Q92994 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.92■□□□□ 0.62
BRF1Q92994 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.92■□□□□ 0.62
BRF1Q92994 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.92■□□□□ 0.62
BRF1Q92994 AC243562.2-201ENST00000561247 970 ntBASIC18.92■□□□□ 0.62
BRF1Q92994 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 AC134684.3-201ENST00000641758 218 ntBASIC18.92■□□□□ 0.62
BRF1Q92994 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
BRF1Q92994 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
BRF1Q92994 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
BRF1Q92994 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BRF1Q92994 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.91■□□□□ 0.62
BRF1Q92994 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.91■□□□□ 0.62
BRF1Q92994 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.91■□□□□ 0.62
BRF1Q92994 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 RBPMS2P1-201ENST00000437762 623 ntBASIC18.91■□□□□ 0.62
BRF1Q92994 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.91■□□□□ 0.62
BRF1Q92994 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.91■□□□□ 0.62
BRF1Q92994 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.91■□□□□ 0.62
BRF1Q92994 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.91■□□□□ 0.62
BRF1Q92994 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.91■□□□□ 0.62
BRF1Q92994 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.91■□□□□ 0.62
BRF1Q92994 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
BRF1Q92994 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
BRF1Q92994 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.91■□□□□ 0.62
BRF1Q92994 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.91■□□□□ 0.62
BRF1Q92994 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.91■□□□□ 0.62
BRF1Q92994 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.91■□□□□ 0.62
BRF1Q92994 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
BRF1Q92994 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.91■□□□□ 0.62
BRF1Q92994 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRF1Q92994 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
BRF1Q92994 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.91■□□□□ 0.62
BRF1Q92994 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
BRF1Q92994 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
BRF1Q92994 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.9■□□□□ 0.62
BRF1Q92994 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.9■□□□□ 0.62
BRF1Q92994 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.9■□□□□ 0.62
BRF1Q92994 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
BRF1Q92994 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BRF1Q92994 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BRF1Q92994 CICP13-201ENST00000422015 2789 ntBASIC18.9■□□□□ 0.62
BRF1Q92994 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
BRF1Q92994 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BRF1Q92994 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
BRF1Q92994 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.9■□□□□ 0.62
BRF1Q92994 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
BRF1Q92994 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms