Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 AP001282.1-201ENST00000531301 1499 ntBASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 MYO15B-237ENST00000642007 4893 ntBASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 AC132872.4-202ENST00000622924 2756 ntBASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 AC022532.1-201ENST00000624563 1728 ntBASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AC079781.3-201ENST00000449110 356 ntBASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AP001005.1-201ENST00000571755 1248 ntBASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 MIR4321-201ENST00000592276 80 ntBASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 MIR7706-201ENST00000613747 67 ntBASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AC116407.3-201ENST00000623905 1129 ntBASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 PMS2P7-201ENST00000506558 1336 ntBASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC54Q8NEL0 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC54Q8NEL0 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC54Q8NEL0 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.08□□□□□ -0.15
CCDC54Q8NEL0 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.08□□□□□ -0.15
CCDC54Q8NEL0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC54Q8NEL0 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 RNA5SP415-201ENST00000517246 115 ntBASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 AC010507.1-201ENST00000633895 436 ntBASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms