Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 TP73-209ENST00000603362 1668 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 POM121L10P-201ENST00000436994 1285 ntBASIC21.49■■□□□ 1.03
NPHP3Q7Z494 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 AC097359.3-201ENST00000603982 1210 ntBASIC21.49■■□□□ 1.03
NPHP3Q7Z494 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 REXO1L1P-202ENST00000608646 1974 ntBASIC21.48■■□□□ 1.03
NPHP3Q7Z494 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 SUN1-204ENST00000403868 978 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 TMEM198B-204ENST00000484016 896 ntBASIC21.48■■□□□ 1.03
NPHP3Q7Z494 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP3Q7Z494 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 AC253536.4-201ENST00000440539 267 ntBASIC21.47■■□□□ 1.03
NPHP3Q7Z494 RPS2P36-201ENST00000456516 831 ntBASIC21.47■■□□□ 1.03
NPHP3Q7Z494 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 CMC2-214ENST00000565925 640 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 AC091812.3-201ENST00000621362 345 ntBASIC21.47■■□□□ 1.03
NPHP3Q7Z494 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
NPHP3Q7Z494 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 HSPB1P2-201ENST00000448722 546 ntBASIC21.46■■□□□ 1.03
NPHP3Q7Z494 GAPDHP40-201ENST00000505218 1006 ntBASIC21.46■■□□□ 1.03
NPHP3Q7Z494 FADS2-212ENST00000522639 360 ntTSL 5 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms