Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
KRT39Q6A163 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
KRT39Q6A163 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 PRAL-201ENST00000624952 3286 ntBASIC17.35■□□□□ 0.37
KRT39Q6A163 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
KRT39Q6A163 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 TSEN15P1-201ENST00000423257 515 ntBASIC17.35■□□□□ 0.37
KRT39Q6A163 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.35■□□□□ 0.37
KRT39Q6A163 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 AC139530.3-201ENST00000620344 690 ntBASIC17.35■□□□□ 0.37
KRT39Q6A163 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
KRT39Q6A163 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
KRT39Q6A163 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.35■□□□□ 0.37
KRT39Q6A163 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.34■□□□□ 0.37
KRT39Q6A163 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
KRT39Q6A163 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT39Q6A163 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.34■□□□□ 0.37
KRT39Q6A163 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
KRT39Q6A163 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
KRT39Q6A163 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
KRT39Q6A163 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.34■□□□□ 0.37
KRT39Q6A163 AL035456.1-201ENST00000456064 1369 ntBASIC17.34■□□□□ 0.37
KRT39Q6A163 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.34■□□□□ 0.37
KRT39Q6A163 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.34■□□□□ 0.37
KRT39Q6A163 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
KRT39Q6A163 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.34■□□□□ 0.37
KRT39Q6A163 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.34■□□□□ 0.37
KRT39Q6A163 MIR4453-201ENST00000584019 89 ntBASIC17.34■□□□□ 0.37
KRT39Q6A163 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT39Q6A163 REXO1L1P-202ENST00000608646 1974 ntBASIC17.34■□□□□ 0.37
KRT39Q6A163 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.34■□□□□ 0.37
KRT39Q6A163 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.34■□□□□ 0.37
KRT39Q6A163 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
KRT39Q6A163 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
KRT39Q6A163 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT39Q6A163 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
KRT39Q6A163 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT39Q6A163 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT39Q6A163 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.34■□□□□ 0.37
KRT39Q6A163 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
KRT39Q6A163 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.33■□□□□ 0.37
KRT39Q6A163 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
KRT39Q6A163 AP003680.1-201ENST00000598970 3660 ntBASIC17.33■□□□□ 0.37
KRT39Q6A163 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.33■□□□□ 0.37
KRT39Q6A163 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
KRT39Q6A163 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
KRT39Q6A163 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
KRT39Q6A163 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
KRT39Q6A163 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
KRT39Q6A163 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.33■□□□□ 0.36
KRT39Q6A163 KRT8P37-201ENST00000451609 1420 ntBASIC17.33■□□□□ 0.36
KRT39Q6A163 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 AL139400.1-201ENST00000366220 510 ntBASIC17.33■□□□□ 0.36
KRT39Q6A163 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
KRT39Q6A163 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.33■□□□□ 0.36
KRT39Q6A163 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.33■□□□□ 0.36
KRT39Q6A163 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.33■□□□□ 0.36
KRT39Q6A163 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.33■□□□□ 0.36
KRT39Q6A163 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.33■□□□□ 0.36
KRT39Q6A163 EEF1DP4-201ENST00000446006 880 ntBASIC17.33■□□□□ 0.36
KRT39Q6A163 AC109322.1-201ENST00000524499 1264 ntBASIC17.33■□□□□ 0.36
KRT39Q6A163 AC069262.1-201ENST00000539058 672 ntBASIC17.33■□□□□ 0.36
KRT39Q6A163 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.33■□□□□ 0.36
KRT39Q6A163 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.33■□□□□ 0.36
KRT39Q6A163 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT39Q6A163 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
KRT39Q6A163 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.32■□□□□ 0.36
KRT39Q6A163 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.32■□□□□ 0.36
KRT39Q6A163 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.32■□□□□ 0.36
KRT39Q6A163 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms