Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA3P55318 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 AC131009.4-201ENST00000624048 1740 ntBASIC12.15□□□□□ -0.46
FOXA3P55318 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC12.15□□□□□ -0.46
FOXA3P55318 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 HOMER2P1-201ENST00000455653 964 ntBASIC12.15□□□□□ -0.46
FOXA3P55318 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC12.15□□□□□ -0.46
FOXA3P55318 S100A2-206ENST00000497140 697 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA3P55318 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC12.15□□□□□ -0.46
FOXA3P55318 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA3P55318 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
FOXA3P55318 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC12.15□□□□□ -0.46
FOXA3P55318 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA3P55318 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
FOXA3P55318 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
FOXA3P55318 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.15□□□□□ -0.47
FOXA3P55318 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.15□□□□□ -0.47
FOXA3P55318 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.47
FOXA3P55318 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA3P55318 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
FOXA3P55318 TNN-203ENST00000622870 3719 ntTSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
FOXA3P55318 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
FOXA3P55318 AC005840.4-201ENST00000541242 2494 ntBASIC12.14□□□□□ -0.47
FOXA3P55318 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 CICP14-201ENST00000629111 2732 ntBASIC12.14□□□□□ -0.47
FOXA3P55318 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 INTS4P1-201ENST00000438455 1935 ntBASIC12.14□□□□□ -0.47
FOXA3P55318 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
FOXA3P55318 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 BX664615.1-201ENST00000443558 458 ntBASIC12.14□□□□□ -0.47
FOXA3P55318 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC12.14□□□□□ -0.47
FOXA3P55318 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
FOXA3P55318 AL353135.1-201ENST00000606729 504 ntBASIC12.14□□□□□ -0.47
FOXA3P55318 IGHV3-41-201ENST00000613121 348 ntBASIC12.14□□□□□ -0.47
FOXA3P55318 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms