Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
FOXA1P55317 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 SLC25A1P1-201ENST00000528351 927 ntBASIC15.58■□□□□ 0.08
FOXA1P55317 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.58■□□□□ 0.08
FOXA1P55317 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.58■□□□□ 0.08
FOXA1P55317 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.58■□□□□ 0.08
FOXA1P55317 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.58■□□□□ 0.08
FOXA1P55317 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.58■□□□□ 0.08
FOXA1P55317 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.58■□□□□ 0.08
FOXA1P55317 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.58■□□□□ 0.08
FOXA1P55317 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 LINC02228-204ENST00000642115 2962 ntBASIC15.57■□□□□ 0.08
FOXA1P55317 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.57■□□□□ 0.08
FOXA1P55317 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
FOXA1P55317 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.57■□□□□ 0.08
FOXA1P55317 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.57■□□□□ 0.08
FOXA1P55317 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.57■□□□□ 0.08
FOXA1P55317 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.57■□□□□ 0.08
FOXA1P55317 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
FOXA1P55317 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.57■□□□□ 0.08
FOXA1P55317 TPM4P1-201ENST00000436100 807 ntBASIC15.57■□□□□ 0.08
FOXA1P55317 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.57■□□□□ 0.08
FOXA1P55317 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.57■□□□□ 0.08
FOXA1P55317 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 AC061975.2-201ENST00000581722 295 ntBASIC15.57■□□□□ 0.08
FOXA1P55317 AC073389.1-201ENST00000595595 795 ntBASIC15.57■□□□□ 0.08
FOXA1P55317 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA1P55317 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA1P55317 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
FOXA1P55317 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.56■□□□□ 0.08
FOXA1P55317 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
FOXA1P55317 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 AC002056.1-201ENST00000395613 760 ntBASIC15.56■□□□□ 0.08
FOXA1P55317 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.56■□□□□ 0.08
FOXA1P55317 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.56■□□□□ 0.08
FOXA1P55317 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms