Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
NUP98P52948 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
NUP98P52948 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP98P52948 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.65■□□□□ 0.74
NUP98P52948 CNN2P10-201ENST00000443067 918 ntBASIC19.65■□□□□ 0.74
NUP98P52948 AC007551.1-201ENST00000457394 519 ntBASIC19.65■□□□□ 0.74
NUP98P52948 RPL13AP20-201ENST00000459725 609 ntBASIC19.65■□□□□ 0.74
NUP98P52948 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.65■□□□□ 0.74
NUP98P52948 AC010328.2-201ENST00000597698 1111 ntBASIC19.65■□□□□ 0.74
NUP98P52948 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.65■□□□□ 0.74
NUP98P52948 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
NUP98P52948 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NUP98P52948 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NUP98P52948 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC19.64■□□□□ 0.74
NUP98P52948 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NUP98P52948 AC069224.1-201ENST00000566372 1715 ntBASIC19.64■□□□□ 0.74
NUP98P52948 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
NUP98P52948 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
NUP98P52948 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
NUP98P52948 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.64■□□□□ 0.73
NUP98P52948 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.64■□□□□ 0.73
NUP98P52948 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 C2orf69P2-201ENST00000562032 1123 ntBASIC19.64■□□□□ 0.73
NUP98P52948 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 AC243960.2-201ENST00000600996 747 ntBASIC19.64■□□□□ 0.73
NUP98P52948 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.64■□□□□ 0.73
NUP98P52948 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.64■□□□□ 0.73
NUP98P52948 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.64■□□□□ 0.73
NUP98P52948 GPR39-203ENST00000622084 900 ntTSL 5 BASIC19.64■□□□□ 0.73
NUP98P52948 SNX12-206ENST00000622259 661 ntTSL 5 BASIC19.64■□□□□ 0.73
NUP98P52948 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 AC018695.7-201ENST00000624587 2492 ntBASIC19.64■□□□□ 0.73
NUP98P52948 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP98P52948 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP98P52948 FOS-202ENST00000535987 1402 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP98P52948 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP98P52948 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP98P52948 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NUP98P52948 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NUP98P52948 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP98P52948 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP98P52948 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP98P52948 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC19.63■□□□□ 0.73
NUP98P52948 MIR1202-201ENST00000408529 83 ntBASIC19.63■□□□□ 0.73
NUP98P52948 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.63■□□□□ 0.73
NUP98P52948 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
NUP98P52948 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP98P52948 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC19.63■□□□□ 0.73
NUP98P52948 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.63■□□□□ 0.73
NUP98P52948 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NUP98P52948 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP98P52948 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NUP98P52948 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP98P52948 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP98P52948 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NUP98P52948 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NUP98P52948 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.63■□□□□ 0.73
NUP98P52948 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.62■□□□□ 0.73
NUP98P52948 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.62■□□□□ 0.73
NUP98P52948 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.62■□□□□ 0.73
NUP98P52948 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP98P52948 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.62■□□□□ 0.73
NUP98P52948 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.62■□□□□ 0.73
NUP98P52948 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.62■□□□□ 0.73
NUP98P52948 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.62■□□□□ 0.73
NUP98P52948 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.62■□□□□ 0.73
NUP98P52948 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP98P52948 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP98P52948 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.62■□□□□ 0.73
NUP98P52948 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
NUP98P52948 AC020907.1-201ENST00000616460 1350 ntBASIC19.62■□□□□ 0.73
NUP98P52948 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP98P52948 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms