Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.87■□□□□ 0.61
NEDD4P46934 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.87■□□□□ 0.61
NEDD4P46934 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.87■□□□□ 0.61
NEDD4P46934 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NEDD4P46934 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
NEDD4P46934 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.86■□□□□ 0.61
NEDD4P46934 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
NEDD4P46934 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.86■□□□□ 0.61
NEDD4P46934 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
NEDD4P46934 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.86■□□□□ 0.61
NEDD4P46934 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.86■□□□□ 0.61
NEDD4P46934 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
NEDD4P46934 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
NEDD4P46934 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
NEDD4P46934 AC008738.7-201ENST00000609744 511 ntBASIC18.86■□□□□ 0.61
NEDD4P46934 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.86■□□□□ 0.61
NEDD4P46934 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.86■□□□□ 0.61
NEDD4P46934 AC105917.1-201ENST00000506637 2539 ntBASIC18.86■□□□□ 0.61
NEDD4P46934 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.86■□□□□ 0.61
NEDD4P46934 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEDD4P46934 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
NEDD4P46934 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
NEDD4P46934 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
NEDD4P46934 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
NEDD4P46934 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
NEDD4P46934 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
NEDD4P46934 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.85■□□□□ 0.61
NEDD4P46934 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.85■□□□□ 0.61
NEDD4P46934 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.85■□□□□ 0.61
NEDD4P46934 SERBP1P3-201ENST00000459980 809 ntBASIC18.85■□□□□ 0.61
NEDD4P46934 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.85■□□□□ 0.61
NEDD4P46934 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.85■□□□□ 0.61
NEDD4P46934 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.85■□□□□ 0.61
NEDD4P46934 AC044860.1-202ENST00000559481 777 ntBASIC18.85■□□□□ 0.61
NEDD4P46934 AC025048.3-201ENST00000590609 569 ntBASIC18.85■□□□□ 0.61
NEDD4P46934 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
NEDD4P46934 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.85■□□□□ 0.61
NEDD4P46934 AC004790.1-201ENST00000612686 536 ntBASIC18.85■□□□□ 0.61
NEDD4P46934 AC005702.4-201ENST00000618393 416 ntBASIC18.85■□□□□ 0.61
NEDD4P46934 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.85■□□□□ 0.61
NEDD4P46934 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
NEDD4P46934 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.85■□□□□ 0.61
NEDD4P46934 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
NEDD4P46934 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
NEDD4P46934 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.85■□□□□ 0.61
NEDD4P46934 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.85■□□□□ 0.61
NEDD4P46934 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NEDD4P46934 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.84■□□□□ 0.61
NEDD4P46934 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
NEDD4P46934 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
NEDD4P46934 AC022144.1-201ENST00000602255 1580 ntBASIC18.84■□□□□ 0.61
NEDD4P46934 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NEDD4P46934 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
NEDD4P46934 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.84■□□□□ 0.61
NEDD4P46934 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
NEDD4P46934 AP003680.1-201ENST00000598970 3660 ntBASIC18.84■□□□□ 0.61
NEDD4P46934 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
NEDD4P46934 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NEDD4P46934 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NEDD4P46934 MIR661-201ENST00000384842 89 ntBASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms