Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USF1P22415 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USF1P22415 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC13.68□□□□□ -0.22
USF1P22415 TSPY26P-202ENST00000565928 3884 ntBASIC13.68□□□□□ -0.22
USF1P22415 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USF1P22415 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USF1P22415 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
USF1P22415 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USF1P22415 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
USF1P22415 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
USF1P22415 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USF1P22415 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USF1P22415 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USF1P22415 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 AC007541.1-201ENST00000570282 1469 ntBASIC13.67□□□□□ -0.22
USF1P22415 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.67□□□□□ -0.22
USF1P22415 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 KRT8P39-201ENST00000396270 1433 ntBASIC13.67□□□□□ -0.22
USF1P22415 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 AL603756.1-201ENST00000606511 2163 ntBASIC13.67□□□□□ -0.22
USF1P22415 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.67□□□□□ -0.22
USF1P22415 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.67□□□□□ -0.22
USF1P22415 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.67□□□□□ -0.22
USF1P22415 AL353779.1-201ENST00000434793 351 ntBASIC13.67□□□□□ -0.22
USF1P22415 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.67□□□□□ -0.22
USF1P22415 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC13.67□□□□□ -0.22
USF1P22415 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.67□□□□□ -0.22
USF1P22415 AC009407.1-201ENST00000568958 598 ntBASIC13.67□□□□□ -0.22
USF1P22415 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.67□□□□□ -0.22
USF1P22415 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.67□□□□□ -0.22
USF1P22415 AC008738.7-201ENST00000609744 511 ntBASIC13.67□□□□□ -0.22
USF1P22415 AL008721.1-201ENST00000609964 604 ntBASIC13.67□□□□□ -0.22
USF1P22415 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.67□□□□□ -0.22
USF1P22415 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC13.67□□□□□ -0.22
USF1P22415 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.67□□□□□ -0.22
USF1P22415 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC13.67□□□□□ -0.22
USF1P22415 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.67□□□□□ -0.22
USF1P22415 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.67□□□□□ -0.22
USF1P22415 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USF1P22415 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.67□□□□□ -0.22
USF1P22415 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.67□□□□□ -0.22
USF1P22415 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
USF1P22415 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
USF1P22415 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 DOC2GP-204ENST00000639052 2548 ntBASIC13.66□□□□□ -0.22
USF1P22415 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.66□□□□□ -0.22
USF1P22415 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.66□□□□□ -0.22
USF1P22415 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
USF1P22415 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 PCDHB17P-201ENST00000539533 2393 ntBASIC13.66□□□□□ -0.22
USF1P22415 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
USF1P22415 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
USF1P22415 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
USF1P22415 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.66□□□□□ -0.22
USF1P22415 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
USF1P22415 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 AL671710.1-201ENST00000610245 2349 ntBASIC13.66□□□□□ -0.22
USF1P22415 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
USF1P22415 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
USF1P22415 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
USF1P22415 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
USF1P22415 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms