Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.32■□□□□ 0.2
COL6A3P12111 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 HLA-A-202ENST00000376806 1854 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.32■□□□□ 0.2
COL6A3P12111 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.32■□□□□ 0.2
COL6A3P12111 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.32■□□□□ 0.2
COL6A3P12111 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.31■□□□□ 0.2
COL6A3P12111 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A3P12111 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL6A3P12111 AC018892.3-201ENST00000623986 2499 ntBASIC16.31■□□□□ 0.2
COL6A3P12111 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A3P12111 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A3P12111 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL6A3P12111 AL157791.1-201ENST00000553667 1699 ntBASIC16.31■□□□□ 0.2
COL6A3P12111 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL6A3P12111 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A3P12111 AQP7P5-201ENST00000428759 1049 ntBASIC16.31■□□□□ 0.2
COL6A3P12111 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.31■□□□□ 0.2
COL6A3P12111 AQP7P4-201ENST00000447083 1042 ntBASIC16.31■□□□□ 0.2
COL6A3P12111 AQP7P2-201ENST00000453967 1041 ntBASIC16.31■□□□□ 0.2
COL6A3P12111 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL6A3P12111 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
COL6A3P12111 AL023803.2-201ENST00000620080 638 ntBASIC16.31■□□□□ 0.2
COL6A3P12111 AQP7P3-201ENST00000624547 1041 ntBASIC16.31■□□□□ 0.2
COL6A3P12111 AC004554.1-201ENST00000422830 1468 ntBASIC16.31■□□□□ 0.2
COL6A3P12111 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.31■□□□□ 0.2
COL6A3P12111 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A3P12111 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.31■□□□□ 0.2
COL6A3P12111 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
COL6A3P12111 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A3P12111 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A3P12111 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC16.3■□□□□ 0.2
COL6A3P12111 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.3■□□□□ 0.2
COL6A3P12111 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC16.3■□□□□ 0.2
COL6A3P12111 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC16.3■□□□□ 0.2
COL6A3P12111 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
COL6A3P12111 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 AC023141.7-201ENST00000430646 407 ntBASIC16.3■□□□□ 0.2
COL6A3P12111 RNMTL1P1-201ENST00000454103 560 ntBASIC16.3■□□□□ 0.2
COL6A3P12111 AC021723.1-201ENST00000486306 515 ntBASIC16.3■□□□□ 0.2
COL6A3P12111 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL6A3P12111 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.3■□□□□ 0.2
COL6A3P12111 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.3■□□□□ 0.2
COL6A3P12111 AC021016.3-201ENST00000608367 477 ntBASIC16.3■□□□□ 0.2
COL6A3P12111 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A3P12111 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.3■□□□□ 0.2
COL6A3P12111 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A3P12111 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL6A3P12111 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A3P12111 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
COL6A3P12111 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.3■□□□□ 0.2
COL6A3P12111 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.3■□□□□ 0.2
COL6A3P12111 AC009113.1-201ENST00000570267 2443 ntBASIC16.3■□□□□ 0.2
COL6A3P12111 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL6A3P12111 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A3P12111 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.3■□□□□ 0.2
COL6A3P12111 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
COL6A3P12111 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A3P12111 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms