Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PMS2P1-201ENST00000431037 1228 ntBASIC16.13■□□□□ 0.17
SHOX2O60902 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.13■□□□□ 0.17
SHOX2O60902 AC009533.2-201ENST00000543664 586 ntBASIC16.13■□□□□ 0.17
SHOX2O60902 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.13■□□□□ 0.17
SHOX2O60902 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.13■□□□□ 0.17
SHOX2O60902 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.13■□□□□ 0.17
SHOX2O60902 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.13■□□□□ 0.17
SHOX2O60902 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
SHOX2O60902 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.13■□□□□ 0.17
SHOX2O60902 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.13■□□□□ 0.17
SHOX2O60902 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.13■□□□□ 0.17
SHOX2O60902 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 AC099521.3-201ENST00000624251 2938 ntBASIC16.12■□□□□ 0.17
SHOX2O60902 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 AC073508.3-201ENST00000619697 1419 ntBASIC16.12■□□□□ 0.17
SHOX2O60902 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
SHOX2O60902 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 TSPY5P-201ENST00000426936 936 ntBASIC16.12■□□□□ 0.17
SHOX2O60902 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.12■□□□□ 0.17
SHOX2O60902 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.12■□□□□ 0.17
SHOX2O60902 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 AL353135.1-201ENST00000606729 504 ntBASIC16.12■□□□□ 0.17
SHOX2O60902 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
SHOX2O60902 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHOX2O60902 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.12■□□□□ 0.17
SHOX2O60902 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.11■□□□□ 0.17
SHOX2O60902 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SHOX2O60902 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 AC097359.2-201ENST00000604992 2389 ntBASIC16.11■□□□□ 0.17
SHOX2O60902 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 ARMC10P1-201ENST00000313754 855 ntBASIC16.11■□□□□ 0.17
SHOX2O60902 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.11■□□□□ 0.17
SHOX2O60902 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms