Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.39■□□□□ 0.05
GFRA3O60609 TPM3P8-201ENST00000330554 643 ntBASIC15.39■□□□□ 0.05
GFRA3O60609 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
GFRA3O60609 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 ARL4AP4-201ENST00000434170 518 ntBASIC15.39■□□□□ 0.05
GFRA3O60609 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.39■□□□□ 0.05
GFRA3O60609 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.39■□□□□ 0.05
GFRA3O60609 PFN2-206ENST00000461930 606 ntTSL 4 BASIC15.39■□□□□ 0.05
GFRA3O60609 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 AC116345.2-201ENST00000512837 523 ntBASIC15.39■□□□□ 0.05
GFRA3O60609 IGHV3-37-201ENST00000518544 340 ntBASIC15.39■□□□□ 0.05
GFRA3O60609 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.39■□□□□ 0.05
GFRA3O60609 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.39■□□□□ 0.05
GFRA3O60609 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC15.39■□□□□ 0.05
GFRA3O60609 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC15.39■□□□□ 0.05
GFRA3O60609 AC103798.2-201ENST00000624292 632 ntBASIC15.39■□□□□ 0.05
GFRA3O60609 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.39■□□□□ 0.05
GFRA3O60609 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
GFRA3O60609 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
GFRA3O60609 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
GFRA3O60609 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.39■□□□□ 0.05
GFRA3O60609 TUBB8P12-201ENST00000308911 1335 ntBASIC15.39■□□□□ 0.05
GFRA3O60609 TUBB7P-202ENST00000428444 1305 ntBASIC15.39■□□□□ 0.05
GFRA3O60609 TUBB8P7-204ENST00000567960 1332 ntBASIC15.39■□□□□ 0.05
GFRA3O60609 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC15.39■□□□□ 0.05
GFRA3O60609 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
GFRA3O60609 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
GFRA3O60609 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
GFRA3O60609 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
GFRA3O60609 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.38■□□□□ 0.05
GFRA3O60609 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.38■□□□□ 0.05
GFRA3O60609 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
GFRA3O60609 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.38■□□□□ 0.05
GFRA3O60609 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC15.38■□□□□ 0.05
GFRA3O60609 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
GFRA3O60609 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.38■□□□□ 0.05
GFRA3O60609 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.38■□□□□ 0.05
GFRA3O60609 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC15.38■□□□□ 0.05
GFRA3O60609 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.38■□□□□ 0.05
GFRA3O60609 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.38■□□□□ 0.05
GFRA3O60609 SLED1-202ENST00000512051 380 ntBASIC15.38■□□□□ 0.05
GFRA3O60609 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.38■□□□□ 0.05
GFRA3O60609 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC15.38■□□□□ 0.05
GFRA3O60609 AC013355.1-201ENST00000562625 723 ntBASIC15.38■□□□□ 0.05
GFRA3O60609 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.38■□□□□ 0.05
GFRA3O60609 AC018695.6-201ENST00000614011 534 ntBASIC15.38■□□□□ 0.05
GFRA3O60609 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.38■□□□□ 0.05
GFRA3O60609 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
GFRA3O60609 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.38■□□□□ 0.05
GFRA3O60609 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.38■□□□□ 0.05
GFRA3O60609 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
GFRA3O60609 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.38■□□□□ 0.05
GFRA3O60609 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
GFRA3O60609 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
GFRA3O60609 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
GFRA3O60609 AC007613.1-201ENST00000572811 2597 ntBASIC15.37■□□□□ 0.05
GFRA3O60609 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
GFRA3O60609 AC020763.4-201ENST00000623414 4170 ntBASIC15.37■□□□□ 0.05
GFRA3O60609 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
GFRA3O60609 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC15.37■□□□□ 0.05
GFRA3O60609 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.37■□□□□ 0.05
GFRA3O60609 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
GFRA3O60609 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
GFRA3O60609 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
GFRA3O60609 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
GFRA3O60609 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC15.37■□□□□ 0.05
GFRA3O60609 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms