Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 GPX1P2-201ENST00000429271 606 ntBASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 AC120114.3-201ENST00000611923 658 ntBASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 AC012183.1-201ENST00000625197 499 ntBASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 AKAP8P1-201ENST00000434743 1349 ntBASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 PRAL-201ENST00000624952 3286 ntBASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.57□□□□□ -0.08
HIF3AQ9Y2N7 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 AC098859.1-201ENST00000502915 1238 ntBASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 AC105233.2-201ENST00000523697 349 ntBASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 AF228730.5-201ENST00000530288 346 ntBASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 AL121894.2-201ENST00000602977 491 ntBASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 AC092384.3-202ENST00000564646 2873 ntBASIC14.56□□□□□ -0.08
HIF3AQ9Y2N7 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms