Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC126755.1-201ENST00000525846 6405 ntBASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 PRAL-201ENST00000624952 3286 ntBASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 AC145285.3-201ENST00000564603 959 ntBASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 AC007064.4-201ENST00000637740 555 ntBASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 LINC01144-201ENST00000626198 1710 ntBASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 CDC14C-201ENST00000428251 1719 ntBASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 AC104109.2-201ENST00000602919 1418 ntBASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 AL121894.2-201ENST00000602977 491 ntBASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 AC006486.2-201ENST00000624246 2199 ntBASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC39Q9UFE4 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 RNU1-129P-201ENST00000384064 167 ntBASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 RHOQP3-201ENST00000437982 621 ntBASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 FDX1P1-201ENST00000449115 551 ntBASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 LINC02447-202ENST00000501888 2146 ntBASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms