Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC055717.3-201ENST00000622967 595 ntBASIC17.23■□□□□ 0.35
SIX2Q9NPC8 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 TMBIM7P-203ENST00000641617 1718 ntBASIC17.23■□□□□ 0.35
SIX2Q9NPC8 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.22■□□□□ 0.35
SIX2Q9NPC8 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 AC005237.2-201ENST00000434368 219 ntBASIC17.22■□□□□ 0.35
SIX2Q9NPC8 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SIX2Q9NPC8 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 AC097359.3-201ENST00000603982 1210 ntBASIC17.21■□□□□ 0.35
SIX2Q9NPC8 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.21■□□□□ 0.35
SIX2Q9NPC8 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SIX2Q9NPC8 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.21■□□□□ 0.34
SIX2Q9NPC8 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.21■□□□□ 0.34
SIX2Q9NPC8 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
SIX2Q9NPC8 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.21■□□□□ 0.34
SIX2Q9NPC8 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SIX2Q9NPC8 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms