Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 MIR943-201ENST00000401286 94 ntBASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 BANF1P1-201ENST00000553684 263 ntBASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TRIM39Q9HCM9 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16■□□□□ 0.15
TRIM39Q9HCM9 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16■□□□□ 0.15
TRIM39Q9HCM9 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRIM39Q9HCM9 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TRIM39Q9HCM9 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRIM39Q9HCM9 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16■□□□□ 0.15
TRIM39Q9HCM9 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 AL139010.1-201ENST00000454878 894 ntBASIC16■□□□□ 0.15
TRIM39Q9HCM9 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16■□□□□ 0.15
TRIM39Q9HCM9 AL158211.3-201ENST00000607385 239 ntBASIC16■□□□□ 0.15
TRIM39Q9HCM9 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM39Q9HCM9 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AC055876.3-201ENST00000431496 288 ntBASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 MTND6P24-201ENST00000440466 518 ntBASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AC097493.3-201ENST00000509725 367 ntBASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AL355385.1-201ENST00000606123 409 ntBASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms