Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.52□□□□□ -0.09
USB1Q9BQ65 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
USB1Q9BQ65 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
USB1Q9BQ65 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
USB1Q9BQ65 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
USB1Q9BQ65 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.52□□□□□ -0.09
USB1Q9BQ65 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.52□□□□□ -0.09
USB1Q9BQ65 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
USB1Q9BQ65 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.52□□□□□ -0.09
USB1Q9BQ65 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 AC008750.5-201ENST00000595500 473 ntTSL 2 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 AC016027.1-202ENST00000607927 1699 ntBASIC14.51□□□□□ -0.09
USB1Q9BQ65 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
USB1Q9BQ65 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
USB1Q9BQ65 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.5□□□□□ -0.09
USB1Q9BQ65 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 AC007919.2-201ENST00000444110 511 ntBASIC14.5□□□□□ -0.09
USB1Q9BQ65 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 AC069262.1-201ENST00000539058 672 ntBASIC14.5□□□□□ -0.09
USB1Q9BQ65 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 AC093520.2-201ENST00000561830 333 ntBASIC14.5□□□□□ -0.09
USB1Q9BQ65 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 AP000842.3-202ENST00000569238 1080 ntBASIC14.5□□□□□ -0.09
USB1Q9BQ65 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 AL355385.1-201ENST00000606123 409 ntBASIC14.5□□□□□ -0.09
USB1Q9BQ65 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.5□□□□□ -0.09
USB1Q9BQ65 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
USB1Q9BQ65 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms