Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.61
NUP88Q99567 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NUP88Q99567 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.83■□□□□ 0.61
NUP88Q99567 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.83■□□□□ 0.61
NUP88Q99567 KRT8P12-202ENST00000472924 1397 ntBASIC18.83■□□□□ 0.61
NUP88Q99567 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
NUP88Q99567 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
NUP88Q99567 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
NUP88Q99567 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
NUP88Q99567 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NUP88Q99567 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.83■□□□□ 0.61
NUP88Q99567 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
NUP88Q99567 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.83■□□□□ 0.6
NUP88Q99567 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.83■□□□□ 0.6
NUP88Q99567 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.83■□□□□ 0.6
NUP88Q99567 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.83■□□□□ 0.6
NUP88Q99567 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.83■□□□□ 0.6
NUP88Q99567 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 AC026979.3-201ENST00000607315 403 ntBASIC18.83■□□□□ 0.6
NUP88Q99567 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
NUP88Q99567 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.83■□□□□ 0.6
NUP88Q99567 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
NUP88Q99567 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP88Q99567 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP88Q99567 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
NUP88Q99567 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
NUP88Q99567 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP88Q99567 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.82■□□□□ 0.6
NUP88Q99567 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.82■□□□□ 0.6
NUP88Q99567 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP88Q99567 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
NUP88Q99567 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 SPDYE17-201ENST00000412399 783 ntBASIC18.82■□□□□ 0.6
NUP88Q99567 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP88Q99567 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.82■□□□□ 0.6
NUP88Q99567 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.82■□□□□ 0.6
NUP88Q99567 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP88Q99567 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 AC025048.6-201ENST00000634326 1161 ntBASIC18.82■□□□□ 0.6
NUP88Q99567 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.82■□□□□ 0.6
NUP88Q99567 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP88Q99567 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 AC008741.2-201ENST00000612792 3115 ntBASIC18.82■□□□□ 0.6
NUP88Q99567 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.82■□□□□ 0.6
NUP88Q99567 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP88Q99567 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
NUP88Q99567 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 AL139010.1-201ENST00000454878 894 ntBASIC18.81■□□□□ 0.6
NUP88Q99567 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.81■□□□□ 0.6
NUP88Q99567 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 AL132655.2-201ENST00000596276 594 ntBASIC18.81■□□□□ 0.6
NUP88Q99567 AL033527.5-202ENST00000641632 1098 ntBASIC18.81■□□□□ 0.6
NUP88Q99567 AC007541.1-201ENST00000570282 1469 ntBASIC18.81■□□□□ 0.6
NUP88Q99567 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms