Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 DDT-204ENST00000404092 805 ntTSL 3 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 AC098831.1-202ENST00000438821 336 ntBASIC12.12□□□□□ -0.47
LINC00477Q96M19 HCG4B-203ENST00000450128 991 ntBASIC12.12□□□□□ -0.47
LINC00477Q96M19 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 AP001282.1-201ENST00000531301 1499 ntBASIC12.11□□□□□ -0.47
LINC00477Q96M19 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 FALEC-201ENST00000416894 566 ntTSL 3 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 AC009947.1-201ENST00000444350 727 ntBASIC12.11□□□□□ -0.47
LINC00477Q96M19 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00477Q96M19 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
LINC00477Q96M19 PMS2P7-201ENST00000506558 1336 ntBASIC12.11□□□□□ -0.47
LINC00477Q96M19 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 FES-204ENST00000414248 2327 ntTSL 2 BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms