Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC079776.4-201ENST00000511039 504 ntBASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 AL662844.1-201ENST00000546340 181 ntBASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 AC011477.6-201ENST00000604980 1927 ntBASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 AC140658.5-201ENST00000438532 169 ntBASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 AL161645.1-201ENST00000622716 1255 ntBASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 AC148477.8-201ENST00000624298 468 ntBASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 AC079328.2-201ENST00000561241 3354 ntBASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC54Q8NEL0 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 IGLL3P-201ENST00000412472 434 ntBASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 RN7SL510P-201ENST00000581311 263 ntBASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC54Q8NEL0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms