Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 AL008707.1-201ENST00000422498 534 ntBASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 NOC2LP2-201ENST00000407594 1944 ntBASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 KRT18P66-201ENST00000452970 1269 ntBASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC1BQ8NDV3 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 SDCCAG3P2-201ENST00000326105 1023 ntBASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 TOMM22P5-201ENST00000416399 439 ntBASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 RN7SL11P-201ENST00000471305 293 ntBASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AL133499.1-201ENST00000596207 608 ntBASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC1BQ8NDV3 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms