Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 KRT43P-201ENST00000434019 910 ntBASIC19.85■□□□□ 0.77
SYNE4Q8N205 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 SLC25A47P1-201ENST00000531577 414 ntBASIC19.85■□□□□ 0.77
SYNE4Q8N205 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 AC036164.1-201ENST00000570544 333 ntBASIC19.85■□□□□ 0.77
SYNE4Q8N205 RN7SL219P-201ENST00000582872 296 ntBASIC19.85■□□□□ 0.77
SYNE4Q8N205 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 AC018665.1-201ENST00000622927 1362 ntBASIC19.84■□□□□ 0.77
SYNE4Q8N205 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 AL607033.1-201ENST00000623900 1599 ntBASIC19.84■□□□□ 0.77
SYNE4Q8N205 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 STX1A-203ENST00000395155 783 ntTSL 2 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 MIR6869-201ENST00000619434 62 ntBASIC19.84■□□□□ 0.77
SYNE4Q8N205 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.84■□□□□ 0.77
SYNE4Q8N205 KRT8P22-201ENST00000562317 1415 ntBASIC19.84■□□□□ 0.77
SYNE4Q8N205 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE4Q8N205 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SYNE4Q8N205 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 LRRFIP1P1-201ENST00000498774 2246 ntBASIC19.83■□□□□ 0.77
SYNE4Q8N205 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SYNE4Q8N205 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SYNE4Q8N205 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SYNE4Q8N205 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SYNE4Q8N205 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SYNE4Q8N205 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SYNE4Q8N205 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 MIR5189-201ENST00000577370 114 ntBASIC19.83■□□□□ 0.77
SYNE4Q8N205 PIGL-212ENST00000581006 554 ntTSL 4 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 CU634019.7-201ENST00000624153 1185 ntBASIC19.83■□□□□ 0.77
SYNE4Q8N205 FP236241.2-201ENST00000624906 1185 ntBASIC19.83■□□□□ 0.77
SYNE4Q8N205 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SYNE4Q8N205 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.83■□□□□ 0.76
SYNE4Q8N205 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SYNE4Q8N205 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC19.83■□□□□ 0.76
SYNE4Q8N205 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SYNE4Q8N205 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SYNE4Q8N205 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SYNE4Q8N205 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.83■□□□□ 0.76
SYNE4Q8N205 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
SYNE4Q8N205 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SYNE4Q8N205 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SYNE4Q8N205 KRT8P44-201ENST00000441609 1350 ntBASIC19.83■□□□□ 0.76
SYNE4Q8N205 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.83■□□□□ 0.76
SYNE4Q8N205 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SYNE4Q8N205 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 MSTO2P-201ENST00000314835 1709 ntBASIC19.82■□□□□ 0.76
SYNE4Q8N205 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms