Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC50Q8IVM0 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC50Q8IVM0 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC50Q8IVM0 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC50Q8IVM0 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 IGLL3P-201ENST00000412472 434 ntBASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 AC009947.1-201ENST00000444350 727 ntBASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 AP001005.1-201ENST00000571755 1248 ntBASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 MIR3909-201ENST00000579518 119 ntBASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 AC112504.1-201ENST00000623415 1841 ntBASIC17.1■□□□□ 0.33
CCDC50Q8IVM0 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 MRPL3P1-201ENST00000400109 1033 ntBASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 RNA5SP415-201ENST00000517246 115 ntBASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 AC104692.2-201ENST00000603054 253 ntBASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 AC069224.1-201ENST00000566372 1715 ntBASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 AP005117.1-202ENST00000581724 1908 ntBASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC50Q8IVM0 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CCDC50Q8IVM0 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC50Q8IVM0 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CCDC50Q8IVM0 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC50Q8IVM0 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC50Q8IVM0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC50Q8IVM0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC50Q8IVM0 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC50Q8IVM0 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CCDC50Q8IVM0 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC50Q8IVM0 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms