Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.44□□□□□ -0.1
CLRN1P58418 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.44□□□□□ -0.1
CLRN1P58418 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
CLRN1P58418 AC024267.1-201ENST00000582320 895 ntBASIC14.44□□□□□ -0.1
CLRN1P58418 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.44□□□□□ -0.1
CLRN1P58418 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.44□□□□□ -0.1
CLRN1P58418 MIR4321-201ENST00000592276 80 ntBASIC14.44□□□□□ -0.1
CLRN1P58418 AC073389.1-201ENST00000595595 795 ntBASIC14.44□□□□□ -0.1
CLRN1P58418 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN1P58418 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN1P58418 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CLRN1P58418 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN1P58418 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN1P58418 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
CLRN1P58418 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN1P58418 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN1P58418 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN1P58418 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN1P58418 AC069224.1-201ENST00000566372 1715 ntBASIC14.44□□□□□ -0.1
CLRN1P58418 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 TSPY26P-202ENST00000565928 3884 ntBASIC14.43□□□□□ -0.1
CLRN1P58418 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN1P58418 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CLRN1P58418 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN1P58418 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN1P58418 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN1P58418 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.43□□□□□ -0.1
CLRN1P58418 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.43□□□□□ -0.1
CLRN1P58418 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.43□□□□□ -0.1
CLRN1P58418 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN1P58418 ALG1L5P-201ENST00000482043 771 ntBASIC14.43□□□□□ -0.1
CLRN1P58418 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.43□□□□□ -0.1
CLRN1P58418 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.43□□□□□ -0.1
CLRN1P58418 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.43□□□□□ -0.1
CLRN1P58418 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.43□□□□□ -0.1
CLRN1P58418 AL671883.3-201ENST00000603274 991 ntBASIC14.43□□□□□ -0.1
CLRN1P58418 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
CLRN1P58418 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLRN1P58418 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CLRN1P58418 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 AC007950.2-201ENST00000615045 2347 ntBASIC14.43□□□□□ -0.1
CLRN1P58418 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN1P58418 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN1P58418 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN1P58418 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.42□□□□□ -0.1
CLRN1P58418 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLRN1P58418 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.42□□□□□ -0.1
CLRN1P58418 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.42□□□□□ -0.1
CLRN1P58418 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.42□□□□□ -0.1
CLRN1P58418 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.42□□□□□ -0.1
CLRN1P58418 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLRN1P58418 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.42□□□□□ -0.1
CLRN1P58418 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.42□□□□□ -0.1
CLRN1P58418 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN1P58418 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.42□□□□□ -0.1
CLRN1P58418 AP000347.1-202ENST00000435868 847 ntBASIC14.42□□□□□ -0.1
CLRN1P58418 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms