Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
NEK3P51956 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
NEK3P51956 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.65■□□□□ 0.26
NEK3P51956 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.65■□□□□ 0.26
NEK3P51956 HMGN1P19-201ENST00000436976 333 ntBASIC16.65■□□□□ 0.26
NEK3P51956 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.65■□□□□ 0.26
NEK3P51956 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.65■□□□□ 0.26
NEK3P51956 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.65■□□□□ 0.26
NEK3P51956 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.65■□□□□ 0.26
NEK3P51956 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.65■□□□□ 0.26
NEK3P51956 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.65■□□□□ 0.26
NEK3P51956 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
NEK3P51956 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
NEK3P51956 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.65■□□□□ 0.26
NEK3P51956 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.65■□□□□ 0.26
NEK3P51956 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEK3P51956 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
NEK3P51956 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
NEK3P51956 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
NEK3P51956 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.26
NEK3P51956 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
NEK3P51956 AP005117.1-202ENST00000581724 1908 ntBASIC16.64■□□□□ 0.26
NEK3P51956 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
NEK3P51956 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
NEK3P51956 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
NEK3P51956 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.64■□□□□ 0.25
NEK3P51956 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.64■□□□□ 0.25
NEK3P51956 MIR346-201ENST00000362234 95 ntBASIC16.64■□□□□ 0.25
NEK3P51956 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 CNN2P2-201ENST00000443536 909 ntBASIC16.64■□□□□ 0.25
NEK3P51956 CNN2P3-201ENST00000450201 906 ntBASIC16.64■□□□□ 0.25
NEK3P51956 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.64■□□□□ 0.25
NEK3P51956 AC067863.1-201ENST00000494933 530 ntBASIC16.64■□□□□ 0.25
NEK3P51956 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.64■□□□□ 0.25
NEK3P51956 AC105233.2-201ENST00000523697 349 ntBASIC16.64■□□□□ 0.25
NEK3P51956 AF228730.5-201ENST00000530288 346 ntBASIC16.64■□□□□ 0.25
NEK3P51956 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
NEK3P51956 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.64■□□□□ 0.25
NEK3P51956 AL512356.2-201ENST00000546955 174 ntBASIC16.64■□□□□ 0.25
NEK3P51956 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.64■□□□□ 0.25
NEK3P51956 AL138918.1-201ENST00000568306 659 ntBASIC16.64■□□□□ 0.25
NEK3P51956 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 AC015911.4-201ENST00000588022 1070 ntBASIC16.64■□□□□ 0.25
NEK3P51956 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.64■□□□□ 0.25
NEK3P51956 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 AL136317.3-201ENST00000618497 906 ntBASIC16.64■□□□□ 0.25
NEK3P51956 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.64■□□□□ 0.25
NEK3P51956 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
NEK3P51956 Z92544.3-201ENST00000624747 417 ntBASIC16.64■□□□□ 0.25
NEK3P51956 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.64■□□□□ 0.25
NEK3P51956 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.64■□□□□ 0.25
NEK3P51956 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.64■□□□□ 0.25
NEK3P51956 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.64■□□□□ 0.25
NEK3P51956 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
NEK3P51956 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.64■□□□□ 0.25
NEK3P51956 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEK3P51956 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
NEK3P51956 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
NEK3P51956 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.63■□□□□ 0.25
NEK3P51956 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
NEK3P51956 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
NEK3P51956 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms