Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 YBX2P1-201ENST00000394192 760 ntBASIC15.22■□□□□ 0.03
RFX3P48380 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.22■□□□□ 0.03
RFX3P48380 AC099522.2-201ENST00000607001 744 ntBASIC15.22■□□□□ 0.03
RFX3P48380 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
RFX3P48380 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
RFX3P48380 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RFX3P48380 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.22■□□□□ 0.03
RFX3P48380 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.22■□□□□ 0.03
RFX3P48380 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RFX3P48380 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.22■□□□□ 0.03
RFX3P48380 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
RFX3P48380 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RFX3P48380 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC15.21■□□□□ 0.03
RFX3P48380 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 LINC00554-201ENST00000564841 3011 ntBASIC15.21■□□□□ 0.03
RFX3P48380 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.21■□□□□ 0.03
RFX3P48380 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.21■□□□□ 0.03
RFX3P48380 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.21■□□□□ 0.03
RFX3P48380 AL671277.1-201ENST00000429656 993 ntBASIC15.21■□□□□ 0.03
RFX3P48380 ALG1L5P-201ENST00000482043 771 ntBASIC15.21■□□□□ 0.03
RFX3P48380 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.21■□□□□ 0.03
RFX3P48380 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.21■□□□□ 0.03
RFX3P48380 AC092865.5-201ENST00000545435 363 ntBASIC15.21■□□□□ 0.03
RFX3P48380 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.21■□□□□ 0.03
RFX3P48380 RARRES2P8-201ENST00000566335 367 ntBASIC15.21■□□□□ 0.03
RFX3P48380 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.21■□□□□ 0.03
RFX3P48380 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.21■□□□□ 0.03
RFX3P48380 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
RFX3P48380 MTDHP5-201ENST00000598980 586 ntBASIC15.21■□□□□ 0.03
RFX3P48380 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 AL596087.1-201ENST00000400979 1969 ntBASIC15.21■□□□□ 0.03
RFX3P48380 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.21■□□□□ 0.03
RFX3P48380 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFX3P48380 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
RFX3P48380 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.02
RFX3P48380 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RFX3P48380 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
RFX3P48380 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.21■□□□□ 0.02
RFX3P48380 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.21■□□□□ 0.02
RFX3P48380 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RFX3P48380 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 AC105917.1-201ENST00000506637 2539 ntBASIC15.2■□□□□ 0.02
RFX3P48380 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.2■□□□□ 0.02
RFX3P48380 PRAL-201ENST00000624952 3286 ntBASIC15.2■□□□□ 0.02
RFX3P48380 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.2■□□□□ 0.02
RFX3P48380 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RFX3P48380 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.2■□□□□ 0.02
RFX3P48380 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.2■□□□□ 0.02
RFX3P48380 MCCD1P2-201ENST00000423228 335 ntBASIC15.2■□□□□ 0.02
RFX3P48380 AC004832.2-201ENST00000426397 482 ntBASIC15.2■□□□□ 0.02
RFX3P48380 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.2■□□□□ 0.02
RFX3P48380 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.2■□□□□ 0.02
RFX3P48380 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.2■□□□□ 0.02
RFX3P48380 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.2■□□□□ 0.02
RFX3P48380 AC010327.4-202ENST00000591484 748 ntBASIC15.2■□□□□ 0.02
RFX3P48380 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.2■□□□□ 0.02
RFX3P48380 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms